Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq

Identification of QTLs for tolerance to hypoxia during germination in rice

(2018) Suk-Man Kim et al.   EUPHYTICA

Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation

(2017) Reena Narsai et al.   PLANT JOURNAL

Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice

(2017) Mengchen Zhang et al.   Frontiers in Plant Science

High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

(2016) Likai Chen et al.   Rice

Mechanisms of growth and patterns of gene expression in oxygen-deprived rice coleoptiles

(2015) Reena Narsai et al.   PLANT JOURNAL

Early seedling vigour, an imperative trait for direct-seeded rice: an overview on physio-morphological parameters and molecular markers

(2015) A. Mahender et al.   PLANTA

Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice

(2015) Sheng-Kai Hsu et al.   Rice

A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping

(2014) Miriam D. Baltazar et al.   EUPHYTICA

OsRACK1 Is Involved in Abscisic Acid- and H2O2-Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.)

(2014) Dongping Zhang et al.   PLoS One

Breaking seed dormancy in long-term stored seeds from Iranian wild almond species

(2014) M. Zeinalabedini et al.   SEED SCIENCE AND TECHNOLOGY

QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red

(2013) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Flood-tolerant rice reduces yield variability and raises expected yield, differentially benefitting socially disadvantaged groups

(2013) Manzoor H. Dar et al.   Scientific Reports

Mapping of quantitative trait loci controlling seedling vigor in rice (Oryza sativa L.) under submergence

(2012) O. E. Manangkil et al.   EUPHYTICA

Convergent Starvation Signals and Hormone Crosstalk in Regulating Nutrient Mobilization upon Germination in Cereals

(2012) Y.-F. Hong et al.   PLANT CELL

OsLEA3-2, an Abiotic Stress Induced Gene of Rice Plays a Key Role in Salt and Drought Tolerance

(2012) Jianli Duan et al.   PLoS One

Adaptation to flooding during emergence and seedling growth in rice and weeds, and implications for crop establishment

(2012) Abdelbagi M. Ismail et al.   AoB Plants

Molecular Analysis of OsLEA4 and Its Contributions to Improve E. coli Viability

(2011) Tingzhang Hu et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Interaction between hydrogen peroxide and plant hormones during germination and the early growth of pea seedlings

(2010) G. BARBA-ESPIN et al.   PLANT CELL AND ENVIRONMENT

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)

(2009) S. Abdolhamid Angaji et al.   EUPHYTICA

Defining Core Metabolic and Transcriptomic Responses to Oxygen Availability in Rice Embryos and Young Seedlings

(2009) R. Narsai et al.   PLANT PHYSIOLOGY

Rice germination and seedling growth in the absence of oxygen

(2008) Leonardo Magneschi et al.   ANNALS OF BOTANY

Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa)

(2008) Abdelbagi M. Ismail et al.   ANNALS OF BOTANY

From intracellular signaling networks to cell death: the dual role of reactive oxygen species in seed physiology

(2008) Christophe Bailly et al.   COMPTES RENDUS BIOLOGIES

Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process

(2008) K. A. Howell et al.   PLANT PHYSIOLOGY

Fine-Mapping Quantitative Trait Loci for Body Weight and Abdominal Fat Traits: Effects of Marker Density and Sample Size

(2008) X. Liu et al.   POULTRY SCIENCE