Conventional and Molecular Techniques from Simple Breeding to Speed Breeding in Crop Plants: Recent Advances and Future Outlook

Transgene-Free Genome Editing in Tomato and Potato Plants Using Agrobacterium-Mediated Delivery of a CRISPR/Cas9 Cytidine Base Editor

(2019) Florian Veillet et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Can High Throughput Phenotyping Help Food Security in the Mediterranean Area?

(2019) Donatella Danzi et al.   Frontiers in Plant Science

Technological perspectives for plant breeding

(2019) Ian D. Godwin et al.   THEORETICAL AND APPLIED GENETICS

Efficiency of three haplomethods in durum wheat (Triticum turgidum subsp. durum Desf.): isolated microspore culture, gynogenesis and wheat × maize crosses

(2019) Olfa Slama-Ayed et al.   Czech Journal of Genetics and Plant Breeding

Q&A: modern crop breeding for future food security

(2019) Kai P. Voss-Fels et al.   BMC BIOLOGY

Application of CRISPR-Cas12a temperature sensitivity for improved genome editing in rice, maize, and Arabidopsis

(2019) Aimee A. Malzahn et al.   BMC BIOLOGY

The application of the CRISPR-Cas9 genome editing machinery in food and agricultural science: Current status, future perspectives, and associated challenges

(2019) Ismail Eş et al.   BIOTECHNOLOGY ADVANCES

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

(2019) Kunling Chen et al.   Annual Review of Plant Biology

Plant breeding at the speed of light: the power of CRISPR/Cas to generate directed genetic diversity at multiple sites

(2019) Felix Wolter et al.   BMC PLANT BIOLOGY

High Efficient and Precise Base Editing of C•G to T•A in the Allotetraploid Cotton ( Gossypium hirsutum ) Genome Using a Modified CRISPR /Cas9 System

(2019) Lei Qin et al.   PLANT BIOTECHNOLOGY JOURNAL

Strong temporal dynamics of QTL action on plant growth progression revealed through high‐throughput phenotyping in canola

(2019) Dominic Knoch et al.   PLANT BIOTECHNOLOGY JOURNAL

Efficient TALEN mediated gene editing in wheat

(2019) Ming Luo et al.   PLANT BIOTECHNOLOGY JOURNAL

Application of Cas12a and nCas9-activation-induced cytidine deaminase for genome editing and as a non-sexual strategy to generate homozygous/multiplex edited plants in the allotetraploid genome of tobacco

(2019) Chen-Tran Hsu et al.   PLANT MOLECULAR BIOLOGY

Creation of Early Flowering Germplasm of Soybean by CRISPR/Cas9 Technology

(2019) Jianan Han et al.   Frontiers in Plant Science

CRISPR/Cas9-Mediated Multiplex Genome Editing of JAGGED Gene in Brassica napus L.

(2019) Qamar U Zaman et al.   Biomolecules

Evaluation of Fast Generation Cycling in Oat (Avena sativa)

(2019) D.J. Heuschele et al.   CEREAL RESEARCH COMMUNICATIONS

Fine-mapping of a major quantitative trait locus Qdff3-1 controlling flowering time in watermelon

(2019) Winnie Gimode et al.   MOLECULAR BREEDING

Generation of new glutinous rice by CRISPR/Cas9-targeted mutagenesis of the Waxy gene in elite rice varieties

(2018) Jinshan Zhang et al.   Journal of Integrative Plant Biology

An Update on Genetic Modification of Chickpea for Increased Yield and Stress Tolerance

(2018) Manoj Kumar et al.   MOLECULAR BIOTECHNOLOGY

Expanding the Scope of CRISPR/Cpf1-Mediated Genome Editing in Rice

(2018) Shaoya Li et al.   Molecular Plant

An epigenetic breeding system in soybean for increased yield and stability

(2018) Sunil K. Kenchanmane Raju et al.   PLANT BIOTECHNOLOGY JOURNAL

Activities and specificities of CRISPR-Cas9 and Cas12a nucleases for targeted mutagenesis in maize

(2018) Keunsub Lee et al.   PLANT BIOTECHNOLOGY JOURNAL

Translating High-Throughput Phenotyping into Genetic Gain

(2018) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

Fast-Forwarding Genetic Gain

(2018) Huihui Li et al.   TRENDS IN PLANT SCIENCE

Targeting repair pathways with small molecules increases precise genome editing in pluripotent stem cells

(2018) Stephan Riesenberg et al.   Nature Communications

Small molecules promote CRISPR-Cpf1-mediated genome editing in human pluripotent stem cells

(2018) Xiaojie Ma et al.   Nature Communications

CRISPR plants now subject to tough GM laws in European Union

(2018) Ewen Callaway   NATURE

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

(2018) Sreya Ghosh et al.   Nature Protocols

Speed breeding orphan crops

(2018) Tinashe Chiurugwi et al.   THEORETICAL AND APPLIED GENETICS

The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit

(2017) Karthik Murugan et al.   MOLECULAR CELL

New variants of CRISPR RNA-guided genome editing enzymes

(2017) Jana Murovec et al.   PLANT BIOTECHNOLOGY JOURNAL

CRISPR/Cas9-mediated efficient targeted mutagenesis in grape in the first generation

(2017) Xianhang Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Low-gluten, nontransgenic wheat engineered with CRISPR/Cas9

(2017) Susana Sánchez-León et al.   PLANT BIOTECHNOLOGY JOURNAL

Use of immature seed germination and single seed descent for rapid genetic gains in pigeonpea

(2017) Kulbhushan Saxena et al.   PLANT BREEDING

Revisiting rice breeding methods – evaluating the use of rapid generation advance (RGA) for routine rice breeding

(2017) Bertrand C. Y. Collard et al.   PLANT PRODUCTION SCIENCE

CRISPR-Cpf1: A New Tool for Plant Genome Editing

(2017) Syed Shan-e-Ali Zaidi et al.   TRENDS IN PLANT SCIENCE

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

(2017) Zhen Liang et al.   Nature Communications

Tackling vitamin A deficiency with biofortified sweetpotato in sub-Saharan Africa

(2017) Jan W. Low et al.   Global Food Security-Agriculture Policy Economics and Environment

Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion

(2017) Vladimir Nekrasov et al.   Scientific Reports

Rapid improvement of grain weight via highly efficient CRISPR/Cas9-mediated multiplex genome editing in rice

(2016) Rongfang Xu et al.   Journal of Genetics and Genomics

From Genetic Mapping to Molecular Breeding: Genomics Have Paved the Highway

(2016) Xuehui Huang   Molecular Plant

Erratum: Corrigendum: Increasing the efficiency of precise genome editing with CRISPR-Cas9 by inhibition of nonhomologous end joining

(2016) Takeshi Maruyama et al.   NATURE BIOTECHNOLOGY

Patterns of CRISPR/Cas9 activity in plants, animals and microbes

(2016) Luisa Bortesi et al.   PLANT BIOTECHNOLOGY JOURNAL

Bulked sample analysis in genetics, genomics and crop improvement

(2016) Cheng Zou et al.   PLANT BIOTECHNOLOGY JOURNAL

Cisgenesis and genome editing: combining concepts and efforts for a smarter use of genetic resources in crop breeding

(2016) Teodoro Cardi   PLANT BREEDING

Regulatory hurdles for genome editing: process- vs. product-based approaches in different regulatory contexts

(2016) Thorben Sprink et al.   PLANT CELL REPORTS

A fully in vitro protocol towards large scale production of recombinant inbred lines in wheat (Triticum aestivum L.)

(2016) Yan Yao et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Time to flowering of temperate pulses in vivo and generation turnover in vivo–in vitro of narrow-leaf lupin accelerated by low red to far-red ratio and high intensity in the far-red region

(2016) Janine S. Croser et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Precocious floral initiation and identification of exact timing of embryo physiological maturity facilitate germination of immature seeds to truncate the lifecycle of pea

(2016) Federico M. Ribalta et al.   PLANT GROWTH REGULATION

Opportunities for Products of New Plant Breeding Techniques

(2016) Jan G. Schaart et al.   TRENDS IN PLANT SCIENCE

Rice: The First Crop Genome

(2016) Scott A. Jackson   Rice

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

(2016) Yi Zhang et al.   Nature Communications

Genomic Tools in Groundnut Breeding Program: Status and Perspectives

(2016) P. Janila et al.   Frontiers in Plant Science

Crossing Methods and Cultivation Conditions for Rapid Production of Segregating Populations in Three Grain Amaranth Species

(2016) Markus G. Stetter et al.   Frontiers in Plant Science

A future scenario of the global regulatory landscape regarding genome-edited crops

(2016) Tetsuya Ishii et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922

(2016) Fujun Wang et al.   PLoS One

Principle and application of plant mutagenesis in crop improvement: a review

(2015) Yusuff Oladosu et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

(2015) Bernd Zetsche et al.   CELL

Plant genome editing by novel tools: TALEN and other sequence specific nucleases

(2015) Thorben Sprink et al.   CURRENT OPINION IN BIOTECHNOLOGY

Improving resistance of different apple cultivars using the Rvi6 scab resistance gene in a cisgenic approach based on the Flp/FRT recombinase system

(2015) Juliane Würdig et al.   MOLECULAR BREEDING

Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennialPopulusreveals 4-coumarate:CoA ligase specificity and redundancy

(2015) Xiaohong Zhou et al.   NEW PHYTOLOGIST

Targeted gene exchange in plant cells mediated by a zinc finger nuclease double cut

(2015) Katja Schneider et al.   PLANT BIOTECHNOLOGY JOURNAL

The Regulatory Status of Genome-edited Crops

(2015) Jeffrey D. Wolt et al.   PLANT BIOTECHNOLOGY JOURNAL

Heritable site-specific mutagenesis using TALENs in maize

(2015) Si Nian Char et al.   PLANT BIOTECHNOLOGY JOURNAL

Designed nucleases for targeted genome editing

(2015) Junwon Lee et al.   PLANT BIOTECHNOLOGY JOURNAL

Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice

(2015) Junhui Zhou et al.   PLANT JOURNAL

Cas9-Guide RNA Directed Genome Editing in Soybean

(2015) Zhongsen Li et al.   PLANT PHYSIOLOGY

Targeted Mutagenesis, Precise Gene Editing, and Site-Specific Gene Insertion in Maize Using Cas9 and Guide RNA

(2015) Sergei Svitashev et al.   PLANT PHYSIOLOGY

Apomixis: new horizons in plant breeding

(2015) Nejdet KANDEMİR et al.   Turkish Journal of Agriculture and Forestry

Development of late blight resistant potatoes by cisgene stacking

(2014) Kwang-Ryong Jo et al.   BMC BIOTECHNOLOGY

Current knowledge on Amaranthus spp.: research avenues for improved nutritional value and yield in leafy amaranths in sub-Saharan Africa

(2014) Enoch G. Achigan-Dako et al.   EUPHYTICA

CRISPR/Cas9 for genome editing: progress, implications and challenges

(2014) F. Zhang et al.   HUMAN MOLECULAR GENETICS

Unlocking the secondary gene-pool of barley with next-generation sequencing

(2014) Neele Wendler et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome engineering via TALENs and CRISPR/Cas9 systems: challenges and perspectives

(2014) Magdy M. Mahfouz et al.   PLANT BIOTECHNOLOGY JOURNAL

Sterol Side Chain Reductase 2 Is a Key Enzyme in the Biosynthesis of Cholesterol, the Common Precursor of Toxic Steroidal Glycoalkaloids in Potato

(2014) S. Sawai et al.   PLANT CELL

Efficient Gene Editing in Tomato in the First Generation Using the Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-Associated9 System

(2014) C. Brooks et al.   PLANT PHYSIOLOGY

Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus

(2014) Harsh Raman et al.   PLoS One

Proximal Remote Sensing Buggies and Potential Applications for Field-Based Phenotyping

(2014) David Deery et al.   Agronomy-Basel

Plant breeding can be made more efficient by having fewer, better crosses

(2013) John R Witcombe et al.   BMC PLANT BIOLOGY

A Flexible, Low-Cost Cart for Proximal Sensing

(2013) Jeffrey W. White et al.   CROP SCIENCE

Plant genome sequencing — applications for crop improvement

(2013) Marie E Bolger et al.   CURRENT OPINION IN BIOTECHNOLOGY

Exploiting a fast neutron mutant genetic resource in Pisum sativum (pea) for functional genomics

(2013) Claire Domoney et al.   FUNCTIONAL PLANT BIOLOGY

Application of the CRISPR–Cas System for Efficient Genome Engineering in Plants

(2013) Yanfei Mao et al.   Molecular Plant

DNA targeting specificity of RNA-guided Cas9 nucleases

(2013) Patrick D Hsu et al.   NATURE BIOTECHNOLOGY

Intragenesis and cisgenesis as alternatives to transgenic crop development

(2013) Inger Baeksted Holme et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system

(2013) Khaoula Belhaj et al.   Plant Methods

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

Crops that feed the world 10. Past successes and future challenges to the role played by wheat in global food security

(2013) Bekele Shiferaw et al.   Food Security

Induced Mutations Unleash the Potentials of Plant Genetic Resources for Food and Agriculture

(2013) Chikelu Mba   Agronomy-Basel

Applications of next-generation sequencing in plant biology

(2012) Ashley N. Egan et al.   AMERICAN JOURNAL OF BOTANY

Application of Genomic Tools in Plant Breeding

(2012) A. M. Perez-de-Castro et al.   CURRENT GENOMICS

TILLINGin extremis

(2012) Trevor L. Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

ZFN-mediated gene targeting of the Arabidopsisprotoporphyrinogen oxidasegene throughAgrobacterium-mediated floral dip transformation

(2012) Sylvia de Pater et al.   PLANT BIOTECHNOLOGY JOURNAL

Application of doubled haploids for target gene fixation in backcross programmes of maize

(2012) Thomas Lübberstedt et al.   PLANT BREEDING

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

Double-Strand Break End Resection and Repair Pathway Choice

(2011) Lorraine S. Symington et al.   Annual Review of Genetics

Effect of source germplasm and season on the in vivo haploid induction rate in tropical maize

(2011) Aida Z. Kebede et al.   EUPHYTICA

The first draft of the pigeonpea genome sequence

(2011) Nagendra K. Singh et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Functional analysis and expression profiling of HcrVf1 and HcrVf2 for development of scab resistant cisgenic and intragenic apples

(2011) Sameer G. Joshi et al.   PLANT MOLECULAR BIOLOGY

Abiotic stress and control of grain number in cereals

(2011) Rudy Dolferus et al.   PLANT SCIENCE

Targeted Genome Editing Across Species Using ZFNs and TALENs

(2011) Andrew J. Wood et al.   SCIENCE

Genetic gain in yield and associated changes in phenotype, trait plasticity and competitive ability of South Australian wheat varieties released between 1958 and 2007

(2011) Victor O. Sadras et al.   Crop & Pasture Science

The need to breed crop varieties suitable for organic farming, using wheat, tomato and broccoli as examples: A review

(2010) E.T. Lammerts van Bueren et al.   NJAS-WAGENINGEN JOURNAL OF LIFE SCIENCES

TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain

(2010) Ting Li et al.   NUCLEIC ACIDS RESEARCH

Haploids and doubled haploids in Brassica spp. for genetic and genomic research

(2010) Alison M. R. Ferrie et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Anther culture for haploid and doubled haploid production

(2010) Maria Antonietta Germanà   PLANT CELL TISSUE AND ORGAN CULTURE

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Reverse breeding: a novel breeding approach based on engineered meiosis

(2009) Rob Dirks et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant genome sequencing: applications for crop improvement

(2009) David Edwards et al.   PLANT BIOTECHNOLOGY JOURNAL

Shoot Na+ Exclusion and Increased Salinity Tolerance Engineered by Cell Type-Specific Alteration of Na+ Transport in Arabidopsis

(2009) I. S. Moller et al.   PLANT CELL

Induction and Identification of a Small-Granule, High-Amylose Mutant in Cassava (Manihot esculentaCrantz)

(2008) Hernán Ceballos et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A transgenic durum wheat line that is free of marker genes and expresses 1Dy10

(2008) Agata Gadaleta et al.   JOURNAL OF CEREAL SCIENCE

Precision breeding for novel starch variants in potato

(2008) Jost Muth et al.   PLANT BIOTECHNOLOGY JOURNAL

Towards molecular breeding of reproductive traits in cereal crops

(2008) Sangam Dwivedi et al.   PLANT BIOTECHNOLOGY JOURNAL

In vitro shortening of generation time in Arabidopsis thaliana

(2008) S. J. Ochatt et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Nutritionally Improved Agricultural Crops

(2008) M. Newell-McGloughlin   PLANT PHYSIOLOGY

Molecular Plant Breeding as the Foundation for 21st Century Crop Improvement

(2008) S. P. Moose et al.   PLANT PHYSIOLOGY

Physiological bases of genetic gains in Mediterranean bread wheat yield in Spain

(2007) Martín M. Acreche et al.   EUROPEAN JOURNAL OF AGRONOMY