Inferring novel lncRNA–disease associations based on a random walk model of a lncRNA functional similarity network

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

(2016) Kun Sun et al.   BMC GENOMICS

Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis

(2013) Ke Liu et al.   BIOINFORMATICS

PLncDB: plant long non-coding RNA database

(2013) J. Jin et al.   BIOINFORMATICS

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Similarity-based methods for potential human microRNA-disease association prediction

(2013) Hailin Chen et al.   BMC Medical Genomics

Long noncoding RNAs and the genetics of cancer

(2013) S W Cheetham et al.   BRITISH JOURNAL OF CANCER

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

Genistein Inhibits Prostate Cancer Cell Growth by Targeting miR-34a and Oncogenic HOTAIR

(2013) Takeshi Chiyomaru et al.   PLoS One

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study

(2012) Lei Sun et al.   BMC BIOINFORMATICS

Epigenetic Repression of miR-31 Disrupts Androgen Receptor Homeostasis and Contributes to Prostate Cancer Progression

(2012) P.-C. Lin et al.   CANCER RESEARCH

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

(2012) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks

(2012) Xingli Guo et al.   NUCLEIC ACIDS RESEARCH

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

DOSim: An R package for similarity between diseases based on Disease Ontology

(2011) Jiang Li et al.   BMC BIOINFORMATICS

Prioritizing disease candidate genes by a gene interconnectedness-based approach

(2011) Chia-Lang Hsu et al.   BMC GENOMICS

Modularity-based credible prediction of disease genes and detection of disease subtypes on the phenotype-gene heterogeneous network

(2011) Xin Yao et al.   BMC Systems Biology

Constructing a gene semantic similarity network for the inference of disease genes

(2011) Rui Jiang et al.   BMC Systems Biology

The functional role of long non-coding RNA in human carcinomas

(2011) Ewan A Gibb et al.   Molecular Cancer

Long non-coding RNAs in Huntington's disease neurodegeneration

(2011) Rory Johnson   NEUROBIOLOGY OF DISEASE

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

NONCODE v3.0: integrative annotation of long noncoding RNAs

(2011) D. Bu et al.   NUCLEIC ACIDS RESEARCH

A Global Clustering Algorithm to Identify Long Intergenic Non-Coding RNA - with Applications in Mouse Macrophages

(2011) Lana X. Garmire et al.   PLoS One

The power of protein interaction networks for associating genes with diseases

(2010) Saket Navlakha et al.   BIOINFORMATICS

Genome-wide inferring gene–phenotype relationship by walking on the heterogeneous network

(2010) Yongjin Li et al.   BIOINFORMATICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

(2010) K. Sakurai et al.   CANCER RESEARCH

Association of Parkinson disease-related protein PINK1 with Alzheimer disease and multiple sclerosis brain lesions

(2010) Micha M.M. Wilhelmus et al.   FREE RADICAL BIOLOGY AND MEDICINE

Critical association of ncRNA with introns

(2010) David Rearick et al.   NUCLEIC ACIDS RESEARCH

lncRNAdb: a reference database for long noncoding RNAs

(2010) Paulo P. Amaral et al.   NUCLEIC ACIDS RESEARCH

RRW: repeated random walks on genome-scale protein networks for local cluster discovery

(2009) Kathy Macropol et al.   BMC BIOINFORMATICS

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery

(2009) Z. Du et al.   NUCLEIC ACIDS RESEARCH

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One