Rhizosphere protists are key determinants of plant health

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

(2019) Zhi-Bo Zhao et al.   Microbiome

Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize

(2019) Maike Hünninghaus et al.   SOIL BIOLOGY & BIOCHEMISTRY

Antibacterial activity against Ralstonia solanacearum of the lipopeptides secreted from the Bacillus amyloliquefaciens strain FJAT-2349

(2019) M.C. Chen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Microbial functional traits are sensitive indicators of mild disturbance by lamb grazing

(2019) Xingyu Ma et al.   ISME Journal

Microbial amendments alter protist communities within the soil microbiome

(2019) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Making sense of environmental sequencing data: Ecologically important functional traits of the protistan groups Cercozoa and Endomyxa (Rhizaria)

(2019) Kenneth Dumack et al.   Molecular Ecology Resources

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Protists: Puppet Masters of the Rhizosphere Microbiome

(2018) Zhilei Gao et al.   TRENDS IN PLANT SCIENCE

Protists are an integral part of the Arabidopsis thaliana microbiome

(2017) Melanie Sapp et al.   ENVIRONMENTAL MICROBIOLOGY

Grazing of leaf-associated Cercomonads (Protists: Rhizaria: Cercozoa) structures bacterial community composition and function

(2017) Sebastian Flues et al.   ENVIRONMENTAL MICROBIOLOGY

Soil protist communities form a dynamic hub in the soil microbiome

(2017) Wu Xiong et al.   ISME Journal

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Bacterial Wilt in China: History, Current Status, and Future Perspectives

(2017) Gaofei Jiang et al.   Frontiers in Plant Science

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists

(2016) David Bass et al.   ENVIRONMENTAL MICROBIOLOGY

The prey’s scent – Volatile organic compound mediated interactions between soil bacteria and their protist predators

(2016) Kristin Schulz-Bohm et al.   ISME Journal

Volatile organic compounds produced by Pseudomonas fluorescens WR-1 restrict the growth and virulence traits of Ralstonia solanacearum

(2016) Waseem Raza et al.   MICROBIOLOGICAL RESEARCH

Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality

(2016) Santiago Soliveres et al.   NATURE

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

The soil food web revisited: Diverse and widespread mycophagous soil protists

(2016) Stefan Geisen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Nonribosomal Peptides, Key Biocontrol Components for Pseudomonas fluorescens In5, Isolated from a Greenlandic Suppressive Soil

(2015) Charlotte F. Michelsen et al.   mBio

Fungal Community Structure in Disease Suppressive Soils Assessed by 28S LSU Gene Sequencing

(2014) C. Ryan Penton et al.   PLoS One

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach

(2010) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Closely related protist strains have different grazing impacts on natural bacterial communities

(2010) Edvard Glücksman et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal community diversity and soil health in intensive potato cropping systems of the east Po valley, northern Italy

(2009) L.M. Manici et al.   ANNALS OF APPLIED BIOLOGY

Protozoan-Induced Regulation of Cyclic Lipopeptide Biosynthesis Is an Effective Predation Defense Mechanism for Pseudomonas fluorescens

(2009) M. Mazzola et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

(2009) Katja Rosenberg et al.   ISME Journal

Rhizosphere bacterial communities associated with disease suppressiveness stages of take-all decline in wheat monoculture

(2009) H. Sanguin et al.   NEW PHYTOLOGIST