Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
出版年份 2020 全文链接
标题
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
作者
关键词
-
出版物
GigaScience
Volume 9, Issue 2, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-02-13
DOI
10.1093/gigascience/giaa002
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
- (2020) Miranda E Pitt et al. GigaScience
- Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen
- (2019) Daniel P. Depledge et al. Nature Communications
- Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
- (2019) Andrew M. Smith et al. PLoS One
- Nanopore native RNA sequencing of a human poly(A) transcriptome
- (2019) Rachael E. Workman et al. NATURE METHODS
- Antibiotic Resistance Plasmids Cointegrated into a Megaplasmid Harboring the bla OXA-427 Carbapenemase Gene
- (2018) Stefanie Desmet et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D
- (2018) Piroon Jenjaroenpun et al. NUCLEIC ACIDS RESEARCH
- Third-generation Sequencing Reveals Extensive Polycistronism and Transcriptional Overlapping in a Baculovirus
- (2018) Norbert Moldován et al. Scientific Reports
- Colonization, Infection, and the Accessory Genome of Klebsiella pneumoniae
- (2018) Rebekah M. Martin et al. Frontiers in Cellular and Infection Microbiology
- Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data
- (2018) Ruichao Li et al. GigaScience
- Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
- (2018) Haotian Teng et al. GigaScience
- Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome
- (2018) Matthew W. Keller et al. Scientific Reports
- Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates
- (2018) Pranita D. Tamma et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates
- (2017) Jamie K. Lemon et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
- (2017) Antonina A. Votintseva et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Towards a genomics-informed, real-time, global pathogen surveillance system
- (2017) Jennifer L. Gardy et al. NATURE REVIEWS GENETICS
- Prediction of antibiotic resistance: time for a new preclinical paradigm?
- (2017) Morten O. A. Sommer et al. NATURE REVIEWS MICROBIOLOGY
- Scaffolding and completing genome assemblies in real-time with nanopore sequencing
- (2017) Minh Duc Cao et al. Nature Communications
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- MgrB Alterations Mediate Colistin Resistance in Klebsiella pneumoniae Isolates from Iran
- (2017) Mehri Haeili et al. Frontiers in Microbiology
- Notes from the Field: Pan-Resistant New Delhi Metallo-Beta-Lactamase-Producing Klebsiella pneumoniae — Washoe County, Nevada, 2016
- (2017) Lei Chen et al. MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Characterisation of IncA/C 2 plasmids carrying an In 416 -like integron with the bla VIM-19 gene from Klebsiella pneumoniae ST383 of Greek origin
- (2016) Costas C. Papagiannitsis et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Molecular mechanisms of polymyxin resistance: knowns and unknowns
- (2016) Sophie Baron et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing
- (2016) Minh Duc Cao et al. GigaScience
- Colistin Resistance Mechanisms in Klebsiella pneumoniae Strains from Taiwan
- (2015) Yi-Hsiang Cheng et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Stepwise evolution of pandrug-resistance in Klebsiella pneumoniae
- (2015) Hosam M. Zowawi et al. Scientific Reports
- Comparative Genomic Analysis of KPC-Encoding pKpQIL-Like Plasmids and Their Distribution in New Jersey and New York Hospitals
- (2014) L. Chen et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Multidrug-resistant and extensively drug-resistant Gram-negative pathogens: current and emerging therapeutic approaches
- (2014) Ilias Karaiskos et al. EXPERT OPINION ON PHARMACOTHERAPY
- Multistate Point-Prevalence Survey of Health Care–Associated Infections
- (2014) Shelley S. Magill et al. NEW ENGLAND JOURNAL OF MEDICINE
- Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria
- (2014) Abiola O. Olaitan et al. Frontiers in Microbiology
- In VivoEmergence of Colistin Resistance in Klebsiella pneumoniae Producing KPC-Type Carbapenemases Mediated by Insertional Inactivation of the PhoQ/PhoPmgrBRegulator
- (2013) Antonio Cannatelli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Derepressed Transfer Properties Leading to the Efficient Spread of the Plasmid Encoding Carbapenemase OXA-48
- (2013) Anaïs Potron et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48
- (2011) Laurent Poirel et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Mauve Assembly Metrics
- (2011) Aaron E. Darling et al. BIOINFORMATICS
- Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance
- (2011) A.-P. Magiorakos et al. CLINICAL MICROBIOLOGY AND INFECTION
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Resistance Plasmid Families in Enterobacteriaceae
- (2009) A. Carattoli ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
- (2009) Rotem Sorek et al. NATURE REVIEWS GENETICS
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features
- (2008) Timo Lassmann et al. NUCLEIC ACIDS RESEARCH
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