标题
Scaffolding and completing genome assemblies in real-time with nanopore sequencing
作者
关键词
-
出版物
Nature Communications
Volume 8, Issue -, Pages 14515
出版商
Springer Nature
发表日期
2017-02-20
DOI
10.1038/ncomms14515
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Nanocall: an open source basecaller for Oxford Nanopore sequencing data
- (2016) Matei David et al. BIOINFORMATICS
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing
- (2016) Minh Duc Cao et al. GigaScience
- Realtime analysis and visualization of MinION sequencing data with npReader
- (2015) Minh Duc Cao et al. BIOINFORMATICS
- Genome assembly using Nanopore-guided long and error-free DNA reads
- (2015) Mohammed-Amin Madoui et al. BMC GENOMICS
- One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
- (2015) Sergey Koren et al. CURRENT OPINION IN MICROBIOLOGY
- Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
- (2015) Sara Goodwin et al. GENOME RESEARCH
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
- Improved data analysis for the MinION nanopore sequencer
- (2015) Miten Jain et al. NATURE METHODS
- Scaffolding of a bacterial genome using MinION nanopore sequencing
- (2015) E. Karlsson et al. Scientific Reports
- LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
- (2015) René L. Warren et al. GigaScience
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Poretools: a toolkit for analyzing nanopore sequence data
- (2014) N. J. Loman et al. BIOINFORMATICS
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
- (2014) Marten Boetzer et al. BMC BIOINFORMATICS
- MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
- (2014) Philip M Ashton et al. NATURE BIOTECHNOLOGY
- Resistance Determinants and Mobile Genetic Elements of an NDM-1-Encoding Klebsiella pneumoniae Strain
- (2014) Corey M. Hudson et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
- (2014) Joshua Quick et al. GigaScience
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- A hybrid approach for the automated finishing of bacterial genomes
- (2012) Ali Bashir et al. NATURE BIOTECHNOLOGY
- PHAST: A Fast Phage Search Tool
- (2011) Y. Zhou et al. NUCLEIC ACIDS RESEARCH
- Detecting genomic islands using bioinformatics approaches
- (2010) Morgan G. I. Langille et al. NATURE REVIEWS MICROBIOLOGY
- Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
- (2009) D. Stoddart et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- The potential and challenges of nanopore sequencing
- (2008) Daniel Branton et al. NATURE BIOTECHNOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now