Dating genomic variants and shared ancestry in population-scale sequencing data

Evaluating the quality of the 1000 genomes project data

(2019) Saurabh Belsare et al.   BMC GENOMICS

Inferring whole-genome histories in large population datasets

(2019) Jerome Kelleher et al.   NATURE GENETICS

A method for genome-wide genealogy estimation for thousands of samples

(2019) Leo Speidel et al.   NATURE GENETICS

An estimator of first coalescent time reveals selection on young variants and large heterogeneity in rare allele ages among human populations

(2019) Alexander Platt et al.   PLoS Genetics

Estimating Time to the Common Ancestor for a Beneficial Allele

(2018) Joel Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput inference of pairwise coalescence times identifies signals of selection and enriched disease heritability

(2018) Pier Francesco Palamara et al.   NATURE GENETICS

Loci associated with skin pigmentation identified in African populations

(2017) Nicholas G. Crawford et al.   SCIENCE

Ancestry and demography and descendants of Iron Age nomads of the Eurasian Steppe

(2017) Martina Unterländer et al.   Nature Communications

Explosive genetic evidence for explosive human population growth

(2016) Feng Gao et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

(2016) Michael A. Eberle et al.   GENOME RESEARCH

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

On the use of dense SNP marker data for the identification of distant relative pairs

(2016) M. Sun et al.   THEORETICAL POPULATION BIOLOGY

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

(2016) Stephan Schiffels et al.   Nature Communications

Loss of gene function and evolution of human phenotypes

(2015) Hye Ji Oh et al.   BMB Reports

Small Amounts of Archaic Admixture Provide Big Insights into Human History

(2015) Selina Vattathil et al.   CELL

Estimating the Ages of Selection Signals from Different Epochs in Human History

(2015) Shigeki Nakagome et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring the age of a fixed beneficial allele

(2015) Louise Ormond et al.   MOLECULAR ECOLOGY

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

The fine-scale genetic structure of the British population

(2015) Stephen Leslie et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Population genetic differentiation of height and body mass index across Europe

(2015) Matthew R Robinson et al.   NATURE GENETICS

Estimating Sampling Selection Bias in Human Genetics: A Phenomenological Approach

(2015) Davide Risso et al.   PLoS One

Genomic evidence for the Pleistocene and recent population history of Native Americans

(2015) M. Raghavan et al.   SCIENCE

A hidden Markov model for investigating recent positive selection through haplotype structure

(2015) Hua Chen et al.   THEORETICAL POPULATION BIOLOGY

Extremely High Mutation Rate of HIV-1 In Vivo

(2015) José M. Cuevas et al.   PLOS BIOLOGY

Genetic Origins of Lactase Persistence and the Spread of Pastoralism in Africa

(2014) Alessia Ranciaro et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Rare Variation Facilitates Inferences of Fine-Scale Population Structure in Humans

(2014) Timothy D. O’Connor et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relatedness in the post-genomic era: is it still useful?

(2014) Doug Speed et al.   NATURE REVIEWS GENETICS

The genetics of Mexico recapitulates Native American substructure and affects biomedical traits

(2014) A. Moreno-Estrada et al.   SCIENCE

Effects of Sample Selection Bias on the Accuracy of Population Structure and Ancestry Inference

(2014) Suyash Shringarpure et al.   G3-Genes Genomes Genetics

Demography and the Age of Rare Variants

(2014) Iain Mathieson et al.   PLoS Genetics

A Population Genetic Signal of Polygenic Adaptation

(2014) Jeremy J. Berg et al.   PLoS Genetics

RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference

(2013) Brian K. Maples et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Modeling Recent Human Evolution in Mice by Expression of a Selected EDAR Variant

(2013) Yana G. Kamberov et al.   CELL

Identity by Descent: Variation in Meiosis, Across Genomes, and in Populations

(2013) E. A. Thompson   GENETICS

Estimating Variable Effective Population Sizes from Multiple Genomes: A Sequentially Markov Conditional Sampling Distribution Approach

(2013) S. Sheehan et al.   GENETICS

The adaptive variant EDARV370A is associated with straight hair in East Asians

(2013) Jingze Tan et al.   HUMAN GENETICS

The Geography of Recent Genetic Ancestry across Europe

(2013) Peter Ralph et al.   PLOS BIOLOGY

Deleterious Alleles in the Human Genome Are on Average Younger Than Neutral Alleles of the Same Frequency

(2013) Adam Kiezun et al.   PLoS Genetics

Inferring Demographic History from a Spectrum of Shared Haplotype Lengths

(2013) Kelley Harris et al.   PLoS Genetics

Ancient Structure in Africa Unlikely to Explain Neanderthal and Non-African Genetic Similarity

(2012) M. A. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing Native American population history

(2012) David Reich et al.   NATURE

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

Improved whole-chromosome phasing for disease and population genetic studies

(2012) Olivier Delaneau et al.   NATURE METHODS

A Fine-Scale Chimpanzee Genetic Map from Population Sequencing

(2012) A. Auton et al.   SCIENCE

A sequentially Markov conditional sampling distribution for structured populations with migration and recombination

(2012) Matthias Steinrücken et al.   THEORETICAL POPULATION BIOLOGY

The Date of Interbreeding between Neandertals and Modern Humans

(2012) Sriram Sankararaman et al.   PLoS Genetics

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Genome-wide analysis reveals novel molecular features of mouse recombination hotspots

(2011) Fatima Smagulova et al.   NATURE

Evolution of lactase persistence: an example of human niche construction

(2011) P. Gerbault et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Missense Mutations in TCF8 Cause Late-Onset Fuchs Corneal Dystrophy and Interact with FCD4 on Chromosome 9p

(2010) S. Amer Riazuddin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture

(2010) O. Francois et al.   MOLECULAR BIOLOGY AND EVOLUTION

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination

(2010) S. Myers et al.   SCIENCE

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

African Genetic Diversity: Implications for Human Demographic History, Modern Human Origins, and Complex Disease Mapping

(2008) Michael C. Campbell et al.   Annual Review of Genomics and Human Genetics

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

Generation time and effective population size in Polar Eskimos

(2008) S. Matsumura et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES