Full-length transcriptome analysis of Coptis deltoidea and identification of putative genes involved in benzylisoquinoline alkaloids biosynthesis based on combined sequencing platforms
出版年份 2020 全文链接
标题
Full-length transcriptome analysis of Coptis deltoidea and identification of putative genes involved in benzylisoquinoline alkaloids biosynthesis based on combined sequencing platforms
作者
关键词
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出版物
PLANT MOLECULAR BIOLOGY
Volume 102, Issue 4-5, Pages 477-499
出版商
Springer Science and Business Media LLC
发表日期
2020-01-05
DOI
10.1007/s11103-019-00959-y
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- (2019) Xiujuan Zhang et al. FISH & SHELLFISH IMMUNOLOGY
- Analysis of transcripts and splice isoforms in Medicago sativa L. by single-molecule long-read sequencing
- (2019) Yuehui Chao et al. PLANT MOLECULAR BIOLOGY
- Comprehensive identification of the full-length transcripts and alternative splicing related to the secondary metabolism pathways in the tea plant (Camellia sinensis)
- (2019) Dahe Qiao et al. Scientific Reports
- Full-Length Transcriptome Analysis of the Genes Involved in Tocopherol Biosynthesis in Torreya grandis
- (2019) Heqiang Lou et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Molecular Origins of Functional Diversity in Benzylisoquinoline Alkaloid Methyltransferases
- (2019) Peter J. Facchini et al. Frontiers in Plant Science
- Complete Pathway Elucidation and Heterologous Reconstitution of Rhodiola Salidroside Biosynthesis
- (2018) Michael P. Torrens-Spence et al. Molecular Plant
- Identification and Characterization of Genes Involved in Benzylisoquinoline Alkaloid Biosynthesis in Coptis Species
- (2018) Si-Mei He et al. Frontiers in Plant Science
- Investigation of benzylisoquinoline alkaloid biosynthetic pathway and its transcriptional regulation in lotus
- (2018) Xianbao Deng et al. Horticulture Research
- Full-length transcriptome sequences and the identification of putative genes for flavonoid biosynthesis in safflower
- (2018) Jiang Chen et al. BMC GENOMICS
- Full-Length Transcriptome Survey and Expression Analysis of Cassia obtusifolia to Discover Putative Genes Related to Aurantio-Obtusin Biosynthesis, Seed Formation and Development, and Stress Response
- (2018) Yin Deng et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Comprehensive quality assessment for Rhizoma Coptidis based on quantitative and qualitative metabolic profiles using high performance liquid chromatography, Fourier transform near-infrared and Fourier transform mid-infrared combined with multivariate statistical analysis
- (2018) Luming Qi et al. JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS
- Analysis of Dendrobium huoshanense transcriptome unveils putative genes associated with active ingredients synthesis
- (2018) Yingdan Yuan et al. BMC GENOMICS
- Next-Generation Sequencing in Oncology: Genetic Diagnosis, Risk Prediction and Cancer Classification
- (2017) Rick Kamps et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Programmatic access to bioinformatics tools from EMBL-EBI update: 2017
- (2017) Szymon Chojnacki et al. NUCLEIC ACIDS RESEARCH
- A multidrug and toxic compound extrusion transporter mediates berberine accumulation into vacuoles in Coptis japonica
- (2017) Kojiro Takanashi et al. PHYTOCHEMISTRY
- Family portraits: the enzymes behind benzylisoquinoline alkaloid diversity
- (2017) Mehran Dastmalchi et al. PHYTOCHEMISTRY REVIEWS
- Transcriptome analyses provide insights into the difference of alkaloids biosynthesis in the Chinese goldthread (Coptis chinensis Franch.) from different biotopes
- (2017) Hanting Chen et al. PeerJ
- Species evolution and quality evaluation of four Coptis herbal medicinal materials in Southwest China
- (2017) Hanting Chen et al. 3 Biotech
- Species evolution and quality evaluation of four Coptis herbal medicinal materials in Southwest China
- (2017) Hanting Chen et al. 3 Biotech
- Identification of candidate genes involved in isoquinoline alkaloids biosynthesis in Dactylicapnos scandens by transcriptome analysis
- (2017) Si Mei He et al. Scientific Reports
- Isolation and Characterization of ReticulineN-Methyltransferase Involved in Biosynthesis of the Aporphine Alkaloid Magnoflorine in Opium Poppy
- (2016) Jeremy S. Morris et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolite Diversity in Alkaloid Biosynthesis: A Multilane (Diastereomer) Highway for Camptothecin Synthesis in Camptotheca acuminata
- (2016) Radin Sadre et al. PLANT CELL
- Identification and developmental expression profiling of putative alkaloid biosynthetic genes in Corydalis yanhusuo bulbs
- (2016) Dengqun Liao et al. Scientific Reports
- The First Comprehensive Phylogeny of Coptis (Ranunculaceae) and Its Implications for Character Evolution and Classification
- (2016) Kun-Li Xiang et al. PLoS One
- Single-molecule real-time transcript sequencing facilitates common wheat genome annotation and grain transcriptome research
- (2015) Lingli Dong et al. BMC GENOMICS
- Metabolome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing plants
- (2015) Jillian M. Hagel et al. BMC PLANT BIOLOGY
- Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues ofSalvia miltiorrhizaand tanshinone biosynthesis
- (2015) Zhichao Xu et al. PLANT JOURNAL
- Comprehensive analyses of molecular phylogeny and main alkaloids for Coptis (Ranunculaceae) species identification
- (2014) Yang He et al. BIOCHEMICAL SYSTEMATICS AND ECOLOGY
- Reconstructing complex regions of genomes using long-read sequencing technology
- (2014) J. Huddleston et al. GENOME RESEARCH
- High-accuracyde novoassembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy
- (2014) Qiushi Li et al. NEW PHYTOLOGIST
- Benzylisoquinoline alkaloid biosynthesis in opium poppy
- (2014) Guillaume A. W. Beaudoin et al. PLANTA
- Benzylisoquinoline Alkaloid Metabolism: A Century of Discovery and a Brave New World
- (2013) Jillian M. Hagel et al. PLANT AND CELL PHYSIOLOGY
- The Shikimate Pathway and Aromatic Amino Acid Biosynthesis in Plants
- (2012) Hiroshi Maeda et al. Annual Review of Plant Biology
- Improvement of Benzylisoquinoline Alkaloid Productivity by Overexpression of 3′-Hydroxy-N-methylcoclaurine 4′-O-Methyltransferase in Transgenic Coptis japonica Plants
- (2012) Takayuki Inui et al. BIOLOGICAL & PHARMACEUTICAL BULLETIN
- Characterization of Coptis japonica CjABCB2, an ATP-binding cassette protein involved in alkaloid transport
- (2012) Nobukazu Shitan et al. PHYTOCHEMISTRY
- Molecular cloning and characterization of a cytochrome P450 in sanguinarine biosynthesis from Eschscholzia californica cells
- (2012) Tomoya Takemura et al. PHYTOCHEMISTRY
- Improving PacBio Long Read Accuracy by Short Read Alignment
- (2012) Kin Fai Au et al. PLoS One
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Bisbenzylisoquinoline Alkaloids from Nelumbo nucifera
- (2011) Atsuko Itoh et al. CHEMICAL & PHARMACEUTICAL BULLETIN
- Functions of ABC transporters in plants
- (2011) Tobias Kretzschmar et al. Essays in Biochemistry
- De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients
- (2011) Hua Wenping et al. GENOMICS
- Bioactivities of berberine metabolites after transformation through CYP450 isoenzymes
- (2011) Yi Li et al. Journal of Translational Medicine
- Isoquinoline Alkaloid Biosynthesis is Regulated by a Unique bHLH-Type Transcription Factor in Coptis japonica
- (2011) Yasuyuki Yamada et al. PLANT AND CELL PHYSIOLOGY
- Tyrosine Aminotransferase Contributes to Benzylisoquinoline Alkaloid Biosynthesis in Opium Poppy
- (2011) E.-J. Lee et al. PLANT PHYSIOLOGY
- Heterologous expression of two FAD-dependent oxidases with (S)-tetrahydroprotoberberine oxidase activity from Arge mone mexicana and Berberis wilsoniae in insect cells
- (2011) Andreas Gesell et al. PLANTA
- Biochemistry and occurrence of O-demethylation in plant metabolism
- (2011) Jillian M. Hagel Frontiers in Physiology
- Unusual P450 reactions in plant secondary metabolism
- (2010) Masaharu Mizutani et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures
- (2010) Isabel Desgagné-Penix et al. BMC PLANT BIOLOGY
- Berberine: a potential phytochemical with multispectrum therapeutic activities
- (2010) Parameswara Rao Vuddanda et al. EXPERT OPINION ON INVESTIGATIONAL DRUGS
- New Insights into the Shikimate and Aromatic Amino Acids Biosynthesis Pathways in Plants
- (2010) Vered Tzin et al. Molecular Plant
- Dioxygenases catalyze the O-demethylation steps of morphine biosynthesis in opium poppy
- (2010) Jillian M Hagel et al. Nature Chemical Biology
- Evolutionary and comparative analysis of MYB and bHLH plant transcription factors
- (2010) Antje Feller et al. PLANT JOURNAL
- Molecular characterization of O-methyltransferases involved in isoquinoline alkaloid biosynthesis in Coptis japonica
- (2010) Takashi MORISHIGE et al. PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES
- A rapid and simple determination of protoberberine alkaloids in Rhizoma Coptidis by 1H NMR and its application for quality control of commercial prescriptions
- (2009) Chia-Ying Li et al. JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS
- Functional characterization of a novel benzylisoquinolineO-methyltransferase suggests its involvement in papaverine biosynthesis in opium poppy (Papaver somniferumL)
- (2009) Silke Pienkny et al. PLANT JOURNAL
- Alkaloid Biosynthesis: Metabolism and Trafficking
- (2008) Jörg Ziegler et al. Annual Review of Plant Biology
- Molecular Cloning and Characterization of CYP80G2, a Cytochrome P450 That Catalyzes an Intramolecular C–C Phenol Coupling of (S)-Reticuline in Magnoflorine Biosynthesis, from CulturedCoptis japonicaCells
- (2008) Nobuhiro Ikezawa et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- CYP719A subfamily of cytochrome P450 oxygenases and isoquinoline alkaloid biosynthesis in Eschscholzia californica
- (2008) Nobuhiro Ikezawa et al. PLANT CELL REPORTS
- Plant ABC proteins – a unified nomenclature and updated inventory
- (2008) Paul J. Verrier et al. TRENDS IN PLANT SCIENCE
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