High-accuracyde novoassembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy
出版年份 2014 全文链接
标题
High-accuracyde novoassembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy
作者
关键词
-
出版物
NEW PHYTOLOGIST
Volume 204, Issue 4, Pages 1041-1049
出版商
Wiley
发表日期
2014-08-08
DOI
10.1111/nph.12966
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Plant DNA barcoding: from gene to genome
- (2014) Xiwen Li et al. BIOLOGICAL REVIEWS
- An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
- (2013) Marco Ferrarini et al. BMC GENOMICS
- Comparative genomics of four Liliales families inferred from the complete chloroplast genome sequence of Veratrum patulum O. Loes. (Melanthiaceae)
- (2013) Hoang Dang Khoa Do et al. GENE
- Phylogenetic Analysis of 47 Chloroplast Genomes Clarifies the Contribution of Wild Species to the Domesticated Apple Maternal Line
- (2013) Svetlana V. Nikiforova et al. MOLECULAR BIOLOGY AND EVOLUTION
- Next-Gen phylogeography of rainforest trees: exploring landscape-level cpDNA variation from whole-genome sequencing
- (2013) M. van der Merwe et al. Molecular Ecology Resources
- Biogenesis and homeostasis of chloroplasts and other plastids
- (2013) Paul Jarvis et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke
- (2013) Dan G. Bock et al. NEW PHYTOLOGIST
- Synthetic biology in plastids
- (2013) Lars B. Scharff et al. PLANT JOURNAL
- The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza
- (2013) Jun Qian et al. PLoS One
- Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants
- (2013) Yue Liu et al. PLoS One
- Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea)
- (2013) Jung Sung Kim et al. PLoS One
- Comparative Chloroplast Genomes of Camellia Species
- (2013) Jun-Bo Yang et al. PLoS One
- Reducing assembly complexity of microbial genomes with single-molecule sequencing
- (2013) Sergey Koren et al. GENOME BIOLOGY
- A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes
- (2013) Gregory W. Stull et al. Applications in Plant Sciences
- Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree
- (2013) Hannah McPherson et al. BMC ECOLOGY
- Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA
- (2012) Nolan Kane et al. AMERICAN JOURNAL OF BOTANY
- Pacific biosciences sequencing technology for genotyping and variation discovery in human data
- (2012) Mauricio O Carneiro et al. BMC GENOMICS
- Application of circular consensus sequencing and network analysis to characterize the bovine IgG repertoire
- (2012) Peter A Larsen et al. BMC IMMUNOLOGY
- Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases
- (2012) E. E. Schadt et al. GENOME RESEARCH
- Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia
- (2012) Catherine C. Smith et al. NATURE
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- The Complete Chloroplast and Mitochondrial Genome Sequences of Boea hygrometrica: Insights into the Evolution of Plant Organellar Genomes
- (2012) Tongwu Zhang et al. PLoS One
- Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)
- (2012) Xiaojun Nie et al. PLoS One
- Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
- (2012) Y. H. Grad et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies
- (2011) L. Doorduin et al. DNA RESEARCH
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
- (2011) Tyson A. Clark et al. NUCLEIC ACIDS RESEARCH
- High-Throughput Sequencing of Three Lemnoideae (Duckweeds) Chloroplast Genomes from Total DNA
- (2011) Wenqin Wang et al. PLoS One
- Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies
- (2010) Ching-Ping Lin et al. Genome Biology and Evolution
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
- (2010) A. J. Alverson et al. MOLECULAR BIOLOGY AND EVOLUTION
- Direct detection of DNA methylation during single-molecule, real-time sequencing
- (2010) Benjamin A Flusberg et al. NATURE METHODS
- A flexible and efficient template format for circular consensus sequencing and SNP detection
- (2010) K. J. Travers et al. NUCLEIC ACIDS RESEARCH
- Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
- (2008) Richard Cronn et al. NUCLEIC ACIDS RESEARCH
- An Optimized Chloroplast DNA Extraction Protocol for Grasses (Poaceae) Proves Suitable for Whole Plastid Genome Sequencing and SNP Detection
- (2008) Kerstin Diekmann et al. PLoS One
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
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