Immune monitoring using mass cytometry and related high-dimensional imaging approaches
出版年份 2019 全文链接
标题
Immune monitoring using mass cytometry and related high-dimensional imaging approaches
作者
关键词
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出版物
Nature Reviews Rheumatology
Volume 16, Issue 2, Pages 87-99
出版商
Springer Science and Business Media LLC
发表日期
2019-12-31
DOI
10.1038/s41584-019-0338-z
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Parallel analysis of tri-molecular biosynthesis with cell identity and function in single cells
- (2019) Samuel C. Kimmey et al. Nature Communications
- Multiplexed profiling of RNA and protein expression signatures in individual cells using flow or mass cytometry
- (2019) Andrew D. Duckworth et al. Nature Protocols
- Distinct phenotype of CD4+ T cells driving celiac disease identified in multiple autoimmune conditions
- (2019) Asbjørn Christophersen et al. NATURE MEDICINE
- Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells
- (2019) Zinaida Good et al. NATURE BIOTECHNOLOGY
- A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry
- (2019) Nicolas Damond et al. Cell Metabolism
- Multiplexed In Situ Imaging Mass Cytometry Analysis of the Human Endocrine Pancreas and Immune System in Type 1 Diabetes
- (2019) Yue J. Wang et al. Cell Metabolism
- A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer
- (2019) Johanna Wagner et al. CELL
- A comparison of single-cell trajectory inference methods
- (2019) Wouter Saelens et al. NATURE BIOTECHNOLOGY
- Deep learning for cellular image analysis
- (2019) Erick Moen et al. NATURE METHODS
- GM-CSF and CXCR4 define a T helper cell signature in multiple sclerosis
- (2019) Edoardo Galli et al. NATURE MEDICINE
- Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy
- (2019) Felix J. Hartmann et al. Cell Reports
- Immunome perturbation is present in patients with juvenile idiopathic arthritis who are in remission and will relapse upon anti-TNFα withdrawal
- (2019) Jing Yao Leong et al. ANNALS OF THE RHEUMATIC DISEASES
- Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
- (2019) Andrea Cossarizza et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure
- (2019) Leeat Keren et al. Science Advances
- Rebooting Human Immunology
- (2018) Mark M. Davis et al. Annual Review of Immunology
- GateFinder: projection-based gating strategy optimization for flow and mass cytometry
- (2018) Nima Aghaeepour et al. BIOINFORMATICS
- Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging
- (2018) Peggie Cheung et al. CELL
- High-Dimensional Single-Cell Mapping of Central Nervous System Immune Cells Reveals Distinct Myeloid Subsets in Health, Aging, and Disease
- (2018) Dunja Mrdjen et al. IMMUNITY
- Comparison of CyTOF assays across sites: Results of a six-center pilot study
- (2018) Michael D. Leipold et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Ruthenium counterstaining for imaging mass cytometry
- (2018) Raúl Catena et al. JOURNAL OF PATHOLOGY
- Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse
- (2018) Zinaida Good et al. NATURE MEDICINE
- Targeting B Cells and Plasma Cells in Autoimmune Diseases
- (2018) Katharina Hofmann et al. Frontiers in Immunology
- Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry
- (2018) Stéphane Chevrier et al. Cell Systems
- Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks
- (2018) Hyunghoon Cho et al. Cell Systems
- Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry
- (2018) Daniel Schulz et al. Cell Systems
- Rheumatoid arthritis
- (2018) Josef S. Smolen et al. Nature Reviews Disease Primers
- Microneedle-based device for the one-step painless collection of capillary blood samples
- (2018) Timothy M. Blicharz et al. Nature Biomedical Engineering
- Stereotypic Immune System Development in Newborn Children
- (2018) Axel Olin et al. CELL
- Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging
- (2018) Yury Goltsev et al. CELL
- A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging
- (2018) Leeat Keren et al. CELL
- Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates
- (2018) Yannick Simoni et al. NATURE
- CDeep3M—Plug-and-Play cloud-based deep learning for image segmentation
- (2018) Matthias G. Haberl et al. NATURE METHODS
- Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry
- (2018) Guojun Han et al. Nature Protocols
- MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data
- (2018) Zicheng Hu et al. Cell Reports
- Deep Learning in Image Cytometry: A Review
- (2018) Anindya Gupta et al. CYTOMETRY PART A
- Dimensionality reduction for visualizing single-cell data using UMAP
- (2018) Etienne Becht et al. NATURE BIOTECHNOLOGY
- Deep generative modeling for single-cell transcriptomics
- (2018) Romain Lopez et al. NATURE METHODS
- U-Net: deep learning for cell counting, detection, and morphometry
- (2018) Thorsten Falk et al. NATURE METHODS
- A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links
- (2018) Helle Krogh Pedersen et al. Nature Protocols
- New insights into the genetics and epigenetics of systemic sclerosis
- (2018) Chiara Angiolilli et al. Nature Reviews Rheumatology
- Cell and fluid sampling microneedle patches for monitoring skin-resident immunity
- (2018) Anasuya Mandal et al. Science Translational Medicine
- Mixed-effects association of single cells identifies an expanded effector CD4+ T cell subset in rheumatoid arthritis
- (2018) Chamith Y. Fonseka et al. Science Translational Medicine
- B cell alterations during BAFF inhibition with belimumab in SLE
- (2018) Daniel Ramsköld et al. EBioMedicine
- Approximated and User Steerable tSNE for Progressive Visual Analytics
- (2017) Nicola Pezzotti et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- Mass cytometry identifies a distinct monocyte cytokine signature shared by clinically heterogeneous pediatric SLE patients
- (2017) W.E. O'Gorman et al. JOURNAL OF AUTOIMMUNITY
- Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis
- (2017) Deepak A. Rao et al. NATURE
- histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data
- (2017) Denis Schapiro et al. NATURE METHODS
- Image Data Resource: a bioimage data integration and publication platform
- (2017) Eleanor Williams et al. NATURE METHODS
- Testing for differential abundance in mass cytometry data
- (2017) Aaron T L Lun et al. NATURE METHODS
- Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types
- (2017) Vincent van Unen et al. Nature Communications
- Sensitive detection of rare disease-associated cell subsets via representation learning
- (2017) Eirini Arvaniti et al. Nature Communications
- Discerning Risk of Disease Transition in Relatives of Systemic Lupus Erythematosus Patients Utilizing Soluble Mediators and Clinical Features
- (2017) Melissa E. Munroe et al. Arthritis & Rheumatology
- More Is Better: Recent Progress in Multi-Omics Data Integration Methods
- (2017) Sijia Huang et al. Frontiers in Genetics
- CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets
- (2016) David Dao et al. BIOINFORMATICS
- Mass Cytometry: Single Cells, Many Features
- (2016) Matthew H. Spitzer et al. CELL
- Biomarkers to guide clinical therapeutics in rheumatology?
- (2016) William H. Robinson et al. CURRENT OPINION IN RHEUMATOLOGY
- Standardization and quality control for high-dimensional mass cytometry studies of human samples
- (2016) Katja Kleinsteuber et al. CYTOMETRY PART A
- Mass cytometry panel optimization through the designed distribution of signal interference
- (2016) Chikara Takahashi et al. CYTOMETRY PART A
- Comparison of clustering methods for high-dimensional single-cell flow and mass cytometry data
- (2016) Lukas M. Weber et al. CYTOMETRY PART A
- Cytometry by time-of-flight immunophenotyping identifies a blood Sjögren's signature correlating with disease activity and glandular inflammation
- (2016) Michael Mingueneau et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- High-dimensional single-cell analysis reveals the immune signature of narcolepsy
- (2016) Felix J. Hartmann et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Simian Immunodeficiency Virus-Producing Cells in Follicles Are Partially Suppressed by CD8 + Cells In Vivo
- (2016) Shengbin Li et al. JOURNAL OF VIROLOGY
- Wishbone identifies bifurcating developmental trajectories from single-cell data
- (2016) Manu Setty et al. NATURE BIOTECHNOLOGY
- Mass cytometry: blessed with the curse of dimensionality
- (2016) Evan W Newell et al. NATURE IMMUNOLOGY
- Automated mapping of phenotype space with single-cell data
- (2016) Nikolay Samusik et al. NATURE METHODS
- Highly multiplexed simultaneous detection of RNAs and proteins in single cells
- (2016) Andreas P Frei et al. NATURE METHODS
- New insights into the immunopathogenesis of systemic lupus erythematosus
- (2016) George C. Tsokos et al. Nature Reviews Rheumatology
- Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
- (2016) David A. Van Valen et al. PLoS Computational Biology
- Multiplexed Epitope-Based Tissue Imaging for Discovery and Healthcare Applications
- (2016) Bernd Bodenmiller Cell Systems
- Sjögren syndrome
- (2016) Pilar Brito-Zerón et al. Nature Reviews Disease Primers
- Systemic lupus erythematosus
- (2016) Arvind Kaul et al. Nature Reviews Disease Primers
- Epigenetics in autoimmune diseases: Pathogenesis and prospects for therapy
- (2015) Zimu Zhang et al. AUTOIMMUNITY REVIEWS
- Quantifying Memory CD8 T Cells Reveals Regionalization of Immunosurveillance
- (2015) Elizabeth M. Steinert et al. CELL
- Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis
- (2015) Jacob H. Levine et al. CELL
- A Continuous Molecular Roadmap to iPSC Reprogramming through Progression Analysis of Single-Cell Mass Cytometry
- (2015) Eli R. Zunder et al. Cell Stem Cell
- A CD45-based barcoding approach to multiplex mass-cytometry (CyTOF)
- (2015) Liyun Lai et al. CYTOMETRY PART A
- FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
- (2015) Sofie Van Gassen et al. CYTOMETRY PART A
- Platinum-conjugated antibodies for application in mass cytometry
- (2015) Henrik E. Mei et al. CYTOMETRY PART A
- The end of gating? An introduction to automated analysis of high dimensional cytometry data
- (2015) Florian Mair et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Single-cell systems-level analysis of human Toll-like receptor activation defines a chemokine signature in patients with systemic lupus erythematosus
- (2015) William E. O'Gorman et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Age-Associated B Cells: A T-bet–Dependent Effector with Roles in Protective and Pathogenic Immunity
- (2015) Kira Rubtsova et al. JOURNAL OF IMMUNOLOGY
- Fine-Needle Aspiration Biopsy of the Lymph Node: A Novel Tool for the Monitoring of Immune Responses after Skin Antigen Delivery
- (2015) Danijela Tatovic et al. JOURNAL OF IMMUNOLOGY
- Algorithmic Tools for Mining High-Dimensional Cytometry Data
- (2015) Cariad Chester et al. JOURNAL OF IMMUNOLOGY
- Barcoding of Live Human Peripheral Blood Mononuclear Cells for Multiplexed Mass Cytometry
- (2015) Henrik E. Mei et al. JOURNAL OF IMMUNOLOGY
- Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
- (2015) Eli R Zunder et al. Nature Protocols
- Technological advances transforming rheumatology
- (2015) William H. Robinson et al. Nature Reviews Rheumatology
- Immune cell profiling to guide therapeutic decisions in rheumatic diseases
- (2015) Joerg Ermann et al. Nature Reviews Rheumatology
- An interactive reference framework for modeling a dynamic immune system
- (2015) M. H. Spitzer et al. SCIENCE
- Human NK cell repertoire diversity reflects immune experience and correlates with viral susceptibility
- (2015) Dara M. Strauss-Albee et al. Science Translational Medicine
- Mass cytometry as a platform for the discovery of cellular biomarkers to guide effective rheumatic disease therapy
- (2015) Nitya Nair et al. ARTHRITIS RESEARCH & THERAPY
- Identification of Hypoxic Cells Using an Organotellurium Tag Compatible with Mass Cytometry
- (2014) Landon J. Edgar et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development
- (2014) Sean C. Bendall et al. CELL
- TNF and TNF-receptors: From mediators of cell death and inflammation to therapeutic giants – past, present and future
- (2014) Lisa M. Sedger et al. CYTOKINE & GROWTH FACTOR REVIEWS
- Autoimmune disease in the epigenetic era: how has epigenetics changed our understanding of disease and how can we expect the field to evolve?
- (2014) Matlock A Jeffries et al. Expert Review of Clinical Immunology
- ImmPort: disseminating data to the public for the future of immunology
- (2014) Sanchita Bhattacharya et al. IMMUNOLOGIC RESEARCH
- Single-cell measurement of the uptake, intratumoral distribution and cell cycle effects of cisplatin using mass cytometry
- (2014) Qing Chang et al. INTERNATIONAL JOURNAL OF CANCER
- Characterizing and Diminishing Autofluorescence in Formalin-fixed Paraffin-embedded Human Respiratory Tissue
- (2014) A. Sally Davis et al. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY
- Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells
- (2014) Evan W Newell et al. NATURE BIOTECHNOLOGY
- Multiplexed ion beam imaging of human breast tumors
- (2014) Michael Angelo et al. NATURE MEDICINE
- Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry
- (2014) Charlotte Giesen et al. NATURE METHODS
- Automated identification of stratifying signatures in cellular subpopulations
- (2014) Robert V. Bruggner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Conditional density-based analysis of T cell signaling in single-cell data
- (2014) S. Krishnaswamy et al. SCIENCE
- IL-17 and GM-CSF Expression Are Antagonistically Regulated by Human T Helper Cells
- (2014) R. Noster et al. Science Translational Medicine
- Clinical recovery from surgery correlates with single-cell immune signatures
- (2014) B. Gaudilliere et al. Science Translational Medicine
- Multiple sclerosis-associated IL2RA polymorphism controls GM-CSF production in human TH cells
- (2014) Felix J. Hartmann et al. Nature Communications
- Sjögren's Syndrome
- (2013) Clio P. Mavragani et al. Annual Review of Pathology-Mechanisms of Disease
- Normalization of mass cytometry data with bead standards
- (2013) Rachel Finck et al. CYTOMETRY PART A
- Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization
- (2013) Evan W Newell et al. NATURE BIOTECHNOLOGY
- viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
- (2013) El-ad David Amir et al. NATURE BIOTECHNOLOGY
- Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue
- (2013) M. J. Gerdes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A platinum-based covalent viability reagent for single-cell mass cytometry
- (2012) Harris G. Fienberg et al. CYTOMETRY PART A
- FlowRepository: A resource of annotated flow cytometry datasets associated with peer-reviewed publications
- (2012) Josef Spidlen et al. CYTOMETRY PART A
- Single-cell mass cytometry adapted to measurements of the cell cycle
- (2012) Gregory K. Behbehani et al. CYTOMETRY PART A
- Cytometry by Time-of-Flight Shows Combinatorial Cytokine Expression and Virus-Specific Cell Niches within a Continuum of CD8+ T Cell Phenotypes
- (2012) Evan W. Newell et al. IMMUNITY
- Histo-Cytometry: A Method for Highly Multiplex Quantitative Tissue Imaging Analysis Applied to Dendritic Cell Subset Microanatomy in Lymph Nodes
- (2012) Michael Y. Gerner et al. IMMUNITY
- Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators
- (2012) Bernd Bodenmiller et al. NATURE BIOTECHNOLOGY
- A deep profiler's guide to cytometry
- (2012) Sean C. Bendall et al. TRENDS IN IMMUNOLOGY
- A B-cell subset uniquely responsive to innate stimuli accumulates in aged mice
- (2011) Y. Hao et al. BLOOD
- Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
- (2011) Peng Qiu et al. NATURE BIOTECHNOLOGY
- Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum
- (2011) S. C. Bendall et al. SCIENCE
- Synthesis of a Functional Metal-Chelating Polymer and Steps toward Quantitative Mass Cytometry Bioassays
- (2010) Daniel Majonis et al. ANALYTICAL CHEMISTRY
- Epitope spreading of the anti-citrullinated protein antibody response occurs before disease onset and is associated with the disease course of early arthritis
- (2010) D. van der Woude et al. ANNALS OF THE RHEUMATIC DISEASES
- Optimizing transformations for automated, high throughput analysis of flow cytometry data
- (2010) Greg Finak et al. BMC BIOINFORMATICS
- Good cell, bad cell: Flow cytometry reveals T-cell subsets important in HIV disease
- (2010) Pratip K. Chattopadhyay et al. CYTOMETRY PART A
- Highly multiparametric analysis by mass cytometry
- (2010) Olga Ornatsky et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Mass Cytometry: Technique for Real Time Single Cell Multitarget Immunoassay Based on Inductively Coupled Plasma Time-of-Flight Mass Spectrometry
- (2009) Dmitry R. Bandura et al. ANALYTICAL CHEMISTRY
- Study of Cell Antigens and Intracellular DNA by Identification of Element-Containing Labels and Metallointercalators Using Inductively Coupled Plasma Mass Spectrometry
- (2008) O. I. Ornatsky et al. ANALYTICAL CHEMISTRY
- MIFlowCyt: The minimum information about a flow cytometry experiment
- (2008) Jamie A. Lee et al. CYTOMETRY PART A
- A Prescription for Human Immunology
- (2008) Mark M. Davis IMMUNITY
- Development of analytical methods for multiplex bio-assay with inductively coupled plasma mass spectrometry
- (2008) Olga I. Ornatsky et al. JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY
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