Depression phenotype identified by using single nucleotide exact amplicon sequence variants of the human gut microbiome

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Systematic Review of Gut Microbiota and Major Depression

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High-fat diet induces depression-like behaviour in mice associated with changes in microbiome, neuropeptide Y, and brain metabolome

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Cyclic Enterobacterial Common Antigen Maintains the Outer Membrane Permeability Barrier of Escherichia coli in a Manner Controlled by YhdP

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The Potential of Gut Commensals in Reinforcing Intestinal Barrier Function and Alleviating Inflammation

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Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units

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Ketamine interactions with gut-microbiota in rats: relevance to its antidepressant and anti-inflammatory properties

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GABA-modulating bacteria of the human gut microbiota

(2018) Philip Strandwitz et al.   Nature Microbiology

Microbiome—The Missing Link in the Gut-Brain Axis: Focus on Its Role in Gastrointestinal and Mental Health

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Increased human intestinal barrier permeability plasma biomarkers zonulin and FABP2 correlated with plasma LPS and altered gut microbiome in anxiety or depression

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Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

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Variations in gut microbiota and fecal metabolic phenotype associated with depression by 16S rRNA gene sequencing and LC/MS-based metabolomics

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The gut microbiome composition associates with bipolar disorder and illness severity

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A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

The MetaCyc database of metabolic pathways and enzymes

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The Relationship between Fatty Acids and Different Depression-Related Brain Regions, and Their Potential Role as Biomarkers of Response to Antidepressants

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Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

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Brain-gut-microbiota axis: challenges for translation in psychiatry

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Inferring human microbial dynamics from temporal metagenomics data: Pitfalls and lessons

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Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

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(2016) Ashley Shade   ISME Journal

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat

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Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism

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Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

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Altered fecal microbiota composition in patients with major depressive disorder

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Proportionality: A Valid Alternative to Correlation for Relative Data

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Human Genetics Shape the Gut Microbiome

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Correlation between the human fecal microbiota and depression

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Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

(2014) Austin G. Davis-Richardson et al.   Frontiers in Microbiology

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

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Effects of allantoin on cognitive function and hippocampal neurogenesis

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Depression, anxiety and their comorbidity in the Swedish general population: point prevalence and the effect on health-related quality of life

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A Case Study for Large-Scale Human Microbiome Analysis Using JCVI’s Metagenomics Reports (METAREP)

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Exposure to a social stressor alters the structure of the intestinal microbiota: Implications for stressor-induced immunomodulation

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Dietary linoleic and oleic fatty acids in relation to severe depressed mood: 10 years follow-up of a national cohort

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