PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data

Molecular mapping of the Cf-10 gene by combining SNP/InDel-index and linkage analysis in tomato (Solanum lycopersicum)

(2019) Guan Liu et al.   BMC PLANT BIOLOGY

Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants

(2019) Yanglin Ding et al.   NEW PHYTOLOGIST

Mapping Gene Markers for Apple Fruit Ring Rot Disease Resistance Using a Multi-omics Approach

(2019) Fei Shen et al.   G3-Genes Genomes Genetics

OUP accepted manuscript

(2018)   BIOINFORMATICS

Combining QTL-seq and linkage mapping to fine map a wild soybean allele characteristic of greater plant height

(2018) Xiaoli Zhang et al.   BMC GENOMICS

Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance

(2018) Ning Xiao et al.   PLANT PHYSIOLOGY

QTLseqr: An R Package for Bulk Segregant Analysis with Next-Generation Sequencing

(2018) Ben N. Mansfeld et al.   Plant Genome

Mapping Late Leaf Spot Resistance in Peanut (Arachis hypogaea) Using QTL-seq Reveals Markers for Marker-Assisted Selection

(2018) Josh Clevenger et al.   Frontiers in Plant Science

Genetic mapping reveals a marker for yellow skin in watermelon (Citrullus lanatus L.)

(2018) Junling Dou et al.   PLoS One

Complete resistance to powdery mildew and partial resistance to downy mildew in a Cucumis hystrix introgression line of cucumber were controlled by a co-localized locus

(2018) Kaijing Zhang et al.   THEORETICAL AND APPLIED GENETICS

Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.)

(2018) Huaiyong Luo et al.   PLANT BIOTECHNOLOGY JOURNAL

Next-generation sequencing to identify candidate genes and develop diagnostic markers for a novel Phytophthora resistance gene, RpsHC18, in soybean

(2017) Chao Zhong et al.   THEORETICAL AND APPLIED GENETICS

Next-Generation Sequencing from Bulked-Segregant Analysis Accelerates the Simultaneous Identification of Two Qualitative Genes in Soybean

(2017) Jian Song et al.   Frontiers in Plant Science

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Mapping Small Effect Mutations in Saccharomyces cerevisiae : Impacts of Experimental Design and Mutational Properties

(2014) Fabien Duveau et al.   G3-Genes Genomes Genetics

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS