Identification and differential regulation of microRNAs in response to methyl jasmonate treatment in Lycoris aurea by deep sequencing

Involvement of miR528 in the Regulation of Arsenite Tolerance in Rice (Oryza sativa L.)

(2015) Qingpo Liu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Conserved and novel heat stress-responsive microRNAs were identified by deep sequencing inSaccharina japonica(Laminariales, Phaeophyta)

(2015) FULI LIU et al.   PLANT CELL AND ENVIRONMENT

Constitutive Expression of RiceMicroRNA528Alters Plant Development and Enhances Tolerance to Salinity Stress and Nitrogen Starvation in Creeping Bentgrass

(2015) Shuangrong Yuan et al.   PLANT PHYSIOLOGY

Small RNAs: A New Paradigm in Plant-Microbe Interactions

(2014) Arne Weiberg et al.   Annual Review of Phytopathology

Alkaloids from Lycoris aurea and their cytotoxicities against the head and neck squamous cell carcinoma

(2014) Jin-Hui Song et al.   FITOTERAPIA

Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing

(2014) Mukesh Jain et al.   JOURNAL OF EXPERIMENTAL BOTANY

A non-canonical plant microRNA target site

(2014) Cécile Brousse et al.   NUCLEIC ACIDS RESEARCH

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

The functional scope of plant microRNA-mediated silencing

(2014) Junyan Li et al.   TRENDS IN PLANT SCIENCE

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Ambient temperature enhanced freezing tolerance of Chrysanthemum dichrum CdICE1 Arabidopsis via miR398

(2013) Yu Chen et al.   BMC BIOLOGY

Towards a Molecular Understanding of the Biosynthesis of Amaryllidaceae Alkaloids in Support of Their Expanding Medical Use

(2013) Adam Takos et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide identification and characterization of cadmium-responsive microRNAs and their target genes in radish (Raphanus sativus L.) roots

(2013) Liang Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

miR395 is involved in detoxification of cadmium in Brassica napus

(2013) Liu Wei Zhang et al.   JOURNAL OF HAZARDOUS MATERIALS

Jasmonate Regulates the INDUCER OF CBF EXPRESSION-C-REPEAT BINDING FACTOR/DRE BINDING FACTOR1 Cascade and Freezing Tolerance in Arabidopsis

(2013) Y. Hu et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress

(2013) Zhiyong Ni et al.   PLANT MOLECULAR BIOLOGY

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

High-Throughput Sequencing of Small RNA Transcriptome Reveals Salt Stress Regulated MicroRNAs in Sugarcane

(2013) Mariana Carnavale Bottino et al.   PLoS One

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

(2013) Runxuan Zhang et al.   PLoS One

De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing

(2013) Ren Wang et al.   PLoS One

Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis

(2012) Miao Y Xu et al.   BMC GENOMICS

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

Global Analysis of Non-coding Small RNAs in Arabidopsis in Response to Jasmonate Treatment by Deep Sequencing Technology

(2012) Bosen Zhang et al.   Journal of Integrative Plant Biology

Molecular and analysis of a phenylalanine ammonia-lyase gene (LrPAL2) from Lycoris radiata

(2012) Yumei Jiang et al.   MOLECULAR BIOLOGY REPORTS

Identification ofTaxusmicroRNAs and their targets with high-throughput sequencing and degradome analysis

(2012) Da-Cheng Hao et al.   PHYSIOLOGIA PLANTARUM

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

High-Throughput Sequencing and Characterization of the Small RNA Transcriptome Reveal Features of Novel and Conserved MicroRNAs in Panax ginseng

(2012) Bin Wu et al.   PLoS One

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Transcriptional machineries in jasmonate-elicited plant secondary metabolism

(2012) Nathan De Geyter et al.   TRENDS IN PLANT SCIENCE

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

(2011) N. W. Breakfield et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

cis- andtrans-Regulation of miR163 and Target Genes Confers Natural Variation of Secondary Metabolites in TwoArabidopsisSpecies and Their Allopolyploids

(2011) Danny W-K. Ng et al.   PLANT CELL

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

Regulation of miR319 during cold stress in sugarcane

(2011) FLÁVIA THIEBAUT et al.   PLANT CELL AND ENVIRONMENT

Lycorine and its Derivatives for Anticancer Drug Design

(2010) D. Lamoral-Theys et al.   MINI-REVIEWS IN MEDICINAL CHEMISTRY

Molecular cloning and characterization of a phenylalanine ammonia-lyase gene (LrPAL) from Lycoris radiata

(2010) Yumei Jiang et al.   MOLECULAR BIOLOGY REPORTS

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Effects of ethylene on somatic embryogenesis and galanthamine content in Leucojum aestivum L. cultures

(2010) A. Ptak et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

CYP719B1 Is Salutaridine Synthase, the C-C Phenol-coupling Enzyme of Morphine Biosynthesis in Opium Poppy

(2009) Andreas Gesell et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Amaryllidaceae and Sceletium alkaloids

(2009) Zhong Jin   NATURAL PRODUCT REPORTS

Jasmonates act with salicylic acid to confer basal thermotolerance in Arabidopsis thaliana

(2009) Shannon M. Clarke et al.   NEW PHYTOLOGIST

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Molecular Cloning and Characterization of CYP80G2, a Cytochrome P450 That Catalyzes an Intramolecular C–C Phenol Coupling of (S)-Reticuline in Magnoflorine Biosynthesis, from CulturedCoptis japonicaCells

(2008) Nobuhiro Ikezawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Evolution of plant microRNAs and their targets

(2008) Michael J. Axtell et al.   TRENDS IN PLANT SCIENCE

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS