Small RNAs: A New Paradigm in Plant-Microbe Interactions

miR482 Regulation of NBS-LRR Defense Genes during Fungal Pathogen Infection in Cotton

(2014) Qian-Hao Zhu et al.   PLoS One

Regulation of Bacterial Metabolism by Small RNAs Using Diverse Mechanisms

(2013) Maksym Bobrovskyy et al.   Annual Review of Genetics

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

CRISPRs: Molecular Signatures Used for Pathogen Subtyping

(2013) Nikki Shariat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

(2013) Vidhyavathi Raman et al.   BMC GENOMICS

Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response

(2013) Bayly S. Wheeler   CHROMOSOME RESEARCH

Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway

(2013) Z. Zhang et al.   GENES & DEVELOPMENT

Identification of Small RNAs Associated with Meiotic Silencing by Unpaired DNA

(2013) Thomas M. Hammond et al.   GENETICS

Functional Diversity of RNAi-Associated sRNAs in Fungi

(2013) Francisco Nicolás et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The RNAi machinery regulates growth and development in the filamentous fungusTrichoderma atroviride

(2013) Nohemi Carreras-Villaseñor et al.   MOLECULAR MICROBIOLOGY

Small RNA Profiling Reveals Phosphorus Deficiency as a Contributing Factor in Symptom Expression for Citrus Huanglongbing Disease

(2013) Hongwei Zhao et al.   Molecular Plant

Contribution of Small RNA Pathway Components in Plant Immunity

(2013) Jang-Kyun Seo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A CRISPR/Cas system mediates bacterial innate immune evasion and virulence

(2013) Timothy R. Sampson et al.   NATURE

Multiplex and homologous recombination–mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9

(2013) Jian-Feng Li et al.   NATURE BIOTECHNOLOGY

Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease

(2013) Vladimir Nekrasov et al.   NATURE BIOTECHNOLOGY

Cas9 as a versatile tool for engineering biology

(2013) Prashant Mali et al.   NATURE METHODS

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

RNAs attack!

(2013) Hannah Stower   NATURE REVIEWS GENETICS

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Identification of MiRNA from Eggplant (Solanum melongena L.) by Small RNA Deep Sequencing and Their Response to Verticillium dahliae Infection

(2013) Liu Yang et al.   PLoS One

A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides

(2013) María Cervantes et al.   PLoS One

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

(2013) Noah Fahlgren et al.   PLoS One

Identification of microRNA-Like RNAs in the Filamentous Fungus Trichoderma reesei by Solexa Sequencing

(2013) Kang Kang et al.   PLoS One

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication

(2013) T. Tsuchiya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA—the Secret of Noble Rot

(2013) David Baulcombe   SCIENCE

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells

(2013) Ophir Shalem et al.   SCIENCE

Genetic Screens in Human Cells Using the CRISPR-Cas9 System

(2013) Tim Wang et al.   SCIENCE

Transgenerational gene silencing causes gain of virulence in a plant pathogen

(2013) Dinah Qutob et al.   Nature Communications

Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

(2013) Susanna K. P. Lau et al.   PLoS Neglected Tropical Diseases

Small RNA sX13: A Multifaceted Regulator of Virulence in the Plant Pathogen Xanthomonas

(2013) Cornelius Schmidtke et al.   PLoS Pathogens

RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

TLRs as miRNA Receptors

(2012) M. Fabbri   CANCER RESEARCH

SID-5 Is an Endosome-Associated Protein Required for Efficient Systemic RNAi in C. elegans

(2012) Andrea Hinas et al.   CURRENT BIOLOGY

DNA replication, RNAi and epigenetic inheritance

(2012) Marlyn Gonzalez et al.   Epigenetics

Dynamics and Innovations within Oomycete Genomes: Insights into Biology, Pathology, and Evolution

(2012) Howard S. Judelson   EUKARYOTIC CELL

Genome-wide identification and profiling of microRNA-like RNAs from Metarhizium anisopliae during development

(2012) Quan Zhou et al.   Fungal Biology

Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

(2012) I. Wilms et al.   JOURNAL OF BACTERIOLOGY

Uptake of Extracellular Double-Stranded RNA by SID-2

(2012) Deborah L. McEwan et al.   MOLECULAR CELL

Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing

(2012) Jiahong Zhou et al.   MOLECULAR GENETICS AND GENOMICS

RNA-guided genetic silencing systems in bacteria and archaea

(2012) Blake Wiedenheft et al.   NATURE

Genome evolution in filamentous plant pathogens: why bigger can be better

(2012) Sylvain Raffaele et al.   NATURE REVIEWS MICROBIOLOGY

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements

(2012) J. D. Laurie et al.   PLANT CELL

Phenotypic Diversification Is Associated with Host-Induced Transposon Derepression in the Sudden Oak Death Pathogen Phytophthora ramorum

(2012) Takao Kasuga et al.   PLoS One

Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans

(2012) Ramesh R. Vetukuri et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conserved tyrosine kinase promotes the import of silencing RNA into Caenorhabditis elegans cells

(2012) A. M. Jose et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

(2012) Ina Wilms et al.   RNA Biology

The Csr/Rsm system of Yersinia and related pathogens

(2012) Ann Kathrin Heroven et al.   RNA Biology

TLR13 Recognizes Bacterial 23S rRNA Devoid of Erythromycin Resistance-Forming Modification

(2012) M. Oldenburg et al.   SCIENCE

Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora

(2011) Fabio Rezzonico et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae

(2011) Hong Liang et al.   BMC GENOMICS

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

(2011) Cristiano C Nunes et al.   BMC GENOMICS

Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA

(2011) Lin Zhang et al.   CELL RESEARCH

How filamentous pathogens co-opt plants: the ins and outs of fungal effectors

(2011) Ronnie de Jonge et al.   CURRENT OPINION IN PLANT BIOLOGY

RNA Interference in Fungi: Pathways, Functions, and Applications

(2011) Yunkun Dang et al.   EUKARYOTIC CELL

Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element

(2011) Ramesh R. Vetukuri et al.   Fungal Biology

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Microarray profiling reveals microRNAs involving soybean resistance to Phytophthora sojae

(2011) Na Guo et al.   GENOME

MicroRNA regulated defense responses in Triticum aestivum L. during Puccinia graminis f.sp. tritici infection

(2011) Om Prakash Gupta et al.   MOLECULAR BIOLOGY REPORTS

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

(2011) Xiaoming Zhang et al.   MOLECULAR CELL

Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans

(2011) RAMESH R. VETUKURI et al.   MOLECULAR PLANT PATHOLOGY

Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies

(2011) CRISTIANO C. NUNES et al.   MOLECULAR PLANT PATHOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

(2011) Cornelius Schmidtke et al.   NUCLEIC ACIDS RESEARCH

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi

(2011) I. A. Drinnenberg et al.   SCIENCE

Boty-like retrotransposons in the filamentous fungus Botrytis cinerea contain the additional antisense gene brtn

(2011) Ming Zhao et al.   VIROLOGY

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity

(2011) Ana López et al.   PLoS Genetics

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris

(2010) Rui-Ping Jiang et al.   BMC GENOMICS

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

(2010) Mingming Xin et al.   BMC PLANT BIOLOGY

Post-transcriptional global regulation by CsrA in bacteria

(2010) Johan Timmermans et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

RNA interference pathways in filamentous fungi

(2010) Liande Li et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The role of Hfq in bacterial pathogens

(2010) Yanjie Chao et al.   CURRENT OPINION IN MICROBIOLOGY

The genomic organization of plant pathogenicity in Fusarium species

(2010) Martijn Rep et al.   CURRENT OPINION IN PLANT BIOLOGY

Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

(2010) X. Wang et al.   GENES & DEVELOPMENT

Transcriptome Analysis of Pseudomonas syringae Identifies New Genes, Noncoding RNAs, and Antisense Activity

(2010) M. J. Filiatrault et al.   JOURNAL OF BACTERIOLOGY

How Many Ways Are There to Generate Small RNAs?

(2010) Hailing Jin et al.   MOLECULAR CELL

Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi

(2010) Heng-Chi Lee et al.   MOLECULAR CELL

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal PathogenBlumeria graminis

(2010) Daniela Nowara et al.   PLANT CELL

Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks

(2010) Weixiong Zhang et al.   PLANT MOLECULAR BIOLOGY

Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity

(2010) Y. Li et al.   PLANT PHYSIOLOGY

The Fate of miRNA* Strand through Evolutionary Analysis: Implication for Degradation As Merely Carrier Strand or Potential Regulatory Molecule?

(2010) Li Guo et al.   PLoS One

Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1

(2010) J. I. B. Bos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells

(2010) P. Dunoyer et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

(2010) A. Molnar et al.   SCIENCE

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

Roles of Plant Small RNAs in Biotic Stress Responses

(2009) Virginia Ruiz-Ferrer et al.   Annual Review of Plant Biology

Host small RNAs are big contributors to plant innate immunity

(2009) Chellappan Padmanabhan et al.   CURRENT OPINION IN PLANT BIOLOGY

A SingledicerGene Is Required for Efficient Gene Silencing Associated with Two Classes of Small Antisense RNAs inMucor circinelloides

(2009) Juan P. de Haro et al.   EUKARYOTIC CELL

qiRNA is a new type of small interfering RNA induced by DNA damage

(2009) Heng-Chi Lee et al.   NATURE

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae

(2009) K. Yoshida et al.   PLANT CELL

Coevolution between a Family of Parasite Virulence Effectors and a Class of LINE-1 Retrotransposons

(2009) Soledad Sacristán et al.   PLoS One

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

(2009) M. Ghildiyal et al.   RNA

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Endogenous small RNAs and antibacterial immunity in plants

(2008) Hailing Jin   FEBS LETTERS

RNA silencing is required for Arabidopsis defence against Verticillium wilt disease

(2008) Ursula Ellendorff et al.   JOURNAL OF EXPERIMENTAL BOTANY

Repression of the Auxin Response Pathway Increases Arabidopsis Susceptibility to Necrotrophic Fungi

(2008) Francisco Llorente et al.   Molecular Plant

Gene Expression Profiling During Asexual Development of the Late Blight Pathogen Phytophthora infestans Reveals a Highly Dynamic Transcriptome

(2008) Howard S. Judelson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

ThersmA-like GenersmAXccofXanthomonas campestrispv.campestrisIs Involved in the Control of Various Cellular Processes, Including Pathogenesis

(2008) Nai-Xia Chao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution

(2008) Katsutomo Okamura et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Long-distance transport of mRNA via parenchyma cells and phloem across the host-parasite junction inCuscuta

(2008) Rakefet David-Schwartz et al.   NEW PHYTOLOGIST

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE

Suppression of the MicroRNA Pathway by Bacterial Effector Proteins

(2008) L. Navarro et al.   SCIENCE

RNAi-mediated crop protection against insects

(2008) Daniel R.G. Price et al.   TRENDS IN BIOTECHNOLOGY

Environmental RNA interference

(2008) Jennifer S. Whangbo et al.   TRENDS IN GENETICS