Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints

Transposon Variants and Their Effects on Gene Expression in Arabidopsis

(2013) Xi Wang et al.   PLoS Genetics

Population Demographic History Can Cause the Appearance of Recombination Hotspots

(2012) Henry R. Johnston et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Variation of presence/absence genes among Arabidopsis populations

(2012) Shengjun Tan et al.   BMC EVOLUTIONARY BIOLOGY

Younger Genes Are Less Likely to Be Essential than Older Genes, and Duplicates Are Less Likely to Be Essential than Singletons of the Same Age

(2012) W.-H. Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

PIECE: a database for plant gene structure comparison and evolution

(2012) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes

(2012) L. K. McHale et al.   PLANT PHYSIOLOGY

Increased levels of noisy splicing in cancers, but not for oncogene-derived transcripts

(2011) Lu Chen et al.   HUMAN MOLECULAR GENETICS

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)

(2011) Lei-Ying Zheng et al.   GENOME BIOLOGY

Expression Level, Evolutionary Rate, and the Cost of Expression

(2010) J. L. Cherry   Genome Biology and Evolution

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

(2010) R. A. Swanson-Wagner et al.   GENOME RESEARCH

Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays

(2010) Luca Santuari et al.   GENOME BIOLOGY

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure

(2009) Hangxing Yang   Biology Direct

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

Evolutionary Persistence of Functional Compensation by Duplicate Genes in Arabidopsis

(2009) Kousuke Hanada et al.   Genome Biology and Evolution

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

(2009) Y. I. Wolf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The complex relationship of gene duplication and essentiality

(2009) Takashi Makino et al.   TRENDS IN GENETICS

Sequencing of natural strains of Arabidopsis thaliana with short reads

(2008) S. Ossowski et al.   GENOME RESEARCH

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Conditional neutrality at two adjacent NBS-LRR disease resistance loci in natural populations ofArabidopsis lyrata

(2008) GESSECA GOS et al.   MOLECULAR ECOLOGY