Investigation of orthologous pathogen recognition gene-rich regions in solanaceous species

Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

(2016) Burkhard Steuernagel et al.   NATURE BIOTECHNOLOGY

Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing

(2016) Kamil Witek et al.   NATURE BIOTECHNOLOGY

Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms

(2016) Cyrielle Gasc et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Analyses of Angiosperm Nucleotide-Binding Site-Leucine-Rich Repeat Genes Reveal Three Anciently Diverged Classes with Distinct Evolutionary Patterns

(2016) Zhu-Qing Shao et al.   PLANT PHYSIOLOGY

Dramatic Number Variation of R Genes in Solanaceae Species Accounted for by a Few R Gene Subfamilies

(2016) Chunhua Wei et al.   PLoS One

Extreme expansion of NBS-encoding genes in Rosaceae

(2015) YanXiao Jia et al.   BMC GENETICS

A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages

(2015) Marialaura Destefanis et al.   BMC PLANT BIOLOGY

TheSolanum commersoniiGenome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives

(2015) Riccardo Aversano et al.   PLANT CELL

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Paleo-evolutionary plasticity of plant disease resistance genes

(2014) Rongzhi Zhang et al.   BMC GENOMICS

Loss and retention of resistance genes in five species of the Brassicaceae family

(2014) Hanneke M Peele et al.   BMC PLANT BIOLOGY

Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq

(2014) Giuseppe Andolfo et al.   BMC PLANT BIOLOGY

Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World

(2014) Hideki Hirakawa et al.   DNA RESEARCH

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

(2014) Noe Fernandez-Pozo et al.   NUCLEIC ACIDS RESEARCH

Exploring genetic variation in the tomato (SolanumsectionLycopersicon) clade by whole-genome sequencing

(2014) et al.   PLANT JOURNAL

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cosegregates with QTL for Resistance to in Pepper ()

(2014) William Z. Rehrig et al.   Plant Genome

High presence/absence gene variability in defense-related gene clusters of Cucumis melo

(2013) Víctor M González et al.   BMC GENOMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide identification and analysis of candidate genes for disease resistance in tomato

(2013) G. Andolfo et al.   MOLECULAR BREEDING

The Role of TIR-NBS and TIR-X Proteins in Plant Basal Defense Responses

(2013) R. S. Nandety et al.   PLANT PHYSIOLOGY

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted sequence capture as a powerful tool for evolutionary analysis1

(2012) Corrinne E. Grover et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals importantSolanumR locus dynamics

(2012) G. Andolfo et al.   NEW PHYTOLOGIST

Genetic and genomic approaches for R-gene mediated disease resistance in tomato: retrospects and prospects

(2012) M. R. Ercolano et al.   PLANT CELL REPORTS

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes

(2012) L. K. McHale et al.   PLANT PHYSIOLOGY

Dynamic Nucleotide-Binding Site and Leucine-Rich Repeat-Encoding Genes in the Grass Family

(2012) S. Luo et al.   PLANT PHYSIOLOGY

Perspectives of genomic diversification and molecular recombination towards R-gene evolution in plants

(2012) Raj Kumar Joshi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Unique evolutionary pattern of numbers of gramineous NBS–LRR genes

(2010) Jing Li et al.   MOLECULAR GENETICS AND GENOMICS

Epigenetic control of plant immunity

(2010) MARÍA E. ALVAREZ et al.   MOLECULAR PLANT PATHOLOGY

Cross species analysis of microarray expression data

(2009) Y. Lu et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Regularized gene selection in cancer microarray meta-analysis

(2009) Shuangge Ma et al.   BMC BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

DNA Chip Analysis in Diverse Organisms with Unsequenced Genomes

(2009) Ross N. Nazar et al.   MOLECULAR BIOTECHNOLOGY

Sequencing and Comparative Analysis of a Conserved Syntenic Segment in the Solanaceae

(2008) Y. Wang et al.   GENETICS