Identification and distribution of the NBS-LRR gene family in the Cassava genome

RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis

(2014) Alejandra Muñoz-Bodnar et al.   PLANT CELL REPORTS

Characterization of Resistance Gene Analogues (RGAs) in Apple (Malus × domestica Borkh.) and Their Evolutionary History of the Rosaceae Family

(2014) Michele Perazzolli et al.   PLoS One

Transcriptional Response of Virus-Infected Cassava and Identification of Putative Sources of Resistance for Cassava Brown Streak Disease

(2014) M. N. Maruthi et al.   PLoS One

High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding

(2014) Ismail Y. Rabbi et al.   VIRUS RESEARCH

Cassava genome from a wild ancestor to cultivated varieties

(2014) Wenquan Wang et al.   Nature Communications

Plant Nucleotide Binding Site–Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses

(2013) Daniela Marone et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide identification and analysis of candidate genes for disease resistance in tomato

(2013) G. Andolfo et al.   MOLECULAR BREEDING

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations

(2013) Florian Jupe et al.   PLANT JOURNAL

Identification and localisation of the NB-LRR gene family within the potato genome

(2012) Florian Jupe et al.   BMC GENOMICS

Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean

(2012) Yang Kang et al.   BMC PLANT BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Dynamic Nucleotide-Binding Site and Leucine-Rich Repeat-Encoding Genes in the Grass Family

(2012) S. Luo et al.   PLANT PHYSIOLOGY

Deconstruction of the (Paleo)Polyploid Grapevine Genome Based on the Analysis of Transposition Events Involving NBS Resistance Genes

(2012) Giulia Malacarne et al.   PLoS One

Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja

(2012) Roberto Lozano et al.   PLoS One

The Cassava Genome: Current Progress, Future Directions

(2012) Simon Prochnik et al.   Tropical Plant Biology

Perspectives of genomic diversification and molecular recombination towards R-gene evolution in plants

(2012) Raj Kumar Joshi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Cell Death Mediated by the N-Terminal Domains of a Unique and Highly Conserved Class of NB-LRR Protein

(2011) Sarah M. Collier et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Comparison of Nucleotide-Binding Site-Leucine-Rich Repeat-Encoding Genes in Arabidopsis

(2011) Y.-L. Guo et al.   PLANT PHYSIOLOGY

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

(2011) Anna M. Mastrangelo et al.   PLANT SCIENCE

A molecular evolutionary concept connecting nonhost resistance, pathogen host range, and pathogen speciation

(2011) Paul Schulze-Lefert et al.   TRENDS IN PLANT SCIENCE

Comparing the regional epidemiology of the cassava mosaic and cassava brown streak virus pandemics in Africa

(2011) J.P. Legg et al.   VIRUS RESEARCH

Differential interaction between cassava mosaic geminiviruses and geminivirus satellites

(2010) B. L. Patil et al.   JOURNAL OF GENERAL VIROLOGY

Unique evolutionary pattern of numbers of gramineous NBS–LRR genes

(2010) Jing Li et al.   MOLECULAR GENETICS AND GENOMICS

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Molecular characterisation and genetic mapping of candidate genes for qualitative disease resistance in perennial ryegrass (Lolium perenne L.)

(2009) Peter M Dracatos et al.   BMC PLANT BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Strong Positive Selection Drives Rapid Diversification of R-Genes in Arabidopsis Relatives

(2009) Qihan Chen et al.   JOURNAL OF MOLECULAR EVOLUTION

Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family

(2009) Brad W. Porter et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide identification of NBS-encoding resistance genes in Brassica rapa

(2009) Jeong-Hwan Mun et al.   MOLECULAR GENETICS AND GENOMICS

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

NB-LRRs work a “bait and switch” on pathogens

(2009) Sarah M. Collier et al.   TRENDS IN PLANT SCIENCE

Recent duplications dominate NBS-encoding gene expansion in two woody species

(2008) Sihai Yang et al.   MOLECULAR GENETICS AND GENOMICS