Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms

Pectin-rich biomass as feedstock for fuel ethanol production

(2012) Meredith C. Edwards et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Glycoside Hydrolases from a targeted Compost Metagenome, activity-screening and functional characterization

(2012) Michael J Dougherty et al.   BMC BIOTECHNOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities

(2012) Juan M. Gonzalez et al.   PLoS One

The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

(2012) Daniel van der Lelie et al.   PLoS One

Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen

(2012) Xin Dai et al.   PLoS One

Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass

(2011) John M. Gladden et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteriocin Production: a Probiotic Trait?

(2011) Alleson Dobson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular phylogenetic diversity of Bacillus community and its temporal–spatial distribution during the swine manure of composting

(2011) Jing Yi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of Dye-Decolorizing Peroxidases fromRhodococcus jostiiRHA1

(2011) Joseph N. Roberts et al.   BIOCHEMISTRY

Comparative fecal metagenomics unveils unique functional capacity of the swine gut

(2011) Regina Lamendella et al.   BMC MICROBIOLOGY

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics

(2011) Nathalie Lombard et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenomic mining for microbiologists

(2011) Tom O Delmont et al.   ISME Journal

Isolation and Identification of Thermophilic Lactobacilli from Traditional Yoghurts of Tribes of Kazerun

(2011) P. Azadnia et al.   Journal of Animal and Veterinary Advances

Discovery and Characterization of Heme Enzymes from Unsequenced Bacteria: Application to Microbial Lignin Degradation

(2011) Margaret E. Brown et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera

(2011) Oksana Lukjancenko et al.   MICROBIAL ECOLOGY

Pathways for degradation of lignin in bacteria and fungi

(2011) Timothy D. H. Bugg et al.   NATURAL PRODUCT REPORTS

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Diversity of Lactobacillus and Bifidobacterium in feces of herbivores, omnivores and carnivores

(2010) Akihito Endo et al.   ANAEROBE

Cellulosomes: Highly Efficient Nanomachines Designed to Deconstruct Plant Cell Wall Complex Carbohydrates

(2010) Carlos M.G.A. Fontes et al.   Annual Review of Biochemistry

Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production

(2010) Emily B. Hollister et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities

(2010) Kristen M. DeAngelis et al.   BioEnergy Research

Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains

(2010) Gurdeep Rastogi et al.   BIORESOURCE TECHNOLOGY

Reconstruction of xylose utilization pathway and regulons in Firmicutes

(2010) Yang Gu et al.   BMC GENOMICS

Bacterial diversity at different stages of the composting process

(2010) Pasi Partanen et al.   BMC MICROBIOLOGY

Composting of municipal solid waste

(2010) Sunil Kumar   CRITICAL REVIEWS IN BIOTECHNOLOGY

The emerging role for bacteria in lignin degradation and bio-product formation

(2010) Timothy DH Bugg et al.   CURRENT OPINION IN BIOTECHNOLOGY

A review of molecular methods to study the microbiota of soil and the mycosphere

(2010) J.D. van Elsas et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders

(2010) Mark Ahmad et al.   Molecular BioSystems

Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community

(2010) Martin Allgaier et al.   PLoS One

Microbial population dynamics and enzyme activities in composting processes with different starting materials

(2010) M.C. Vargas-García et al.   WASTE MANAGEMENT

Achievements and new knowledge unraveled by metagenomic approaches

(2009) Carola Simon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Polymerase chain reaction primers miss half of rRNA microbial diversity

(2009) SunHee Hong et al.   ISME Journal

Determination of fungal succession during municipal solid waste composting using a cloning-based analysis

(2009) J. Hultman et al.   JOURNAL OF APPLIED MICROBIOLOGY

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lignocellulosic residues: Biodegradation and bioconversion by fungi

(2008) Carmen Sánchez   BIOTECHNOLOGY ADVANCES

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

DyP-type peroxidases comprise a novel heme peroxidase family

(2008) Y. Sugano   CELLULAR AND MOLECULAR LIFE SCIENCES

The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

(2008) Stephen J Bent et al.   ISME Journal

Application of molecular identification tools for Lactobacillus, with a focus on discrimination between closely related species: A review

(2008) Smita Singh et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Application of COMPOCHIP Microarray to Investigate the Bacterial Communities of Different Composts

(2008) Ingrid H. Franke-Whittle et al.   MICROBIAL ECOLOGY

Genome-scale analyses of health-promoting bacteria: probiogenomics

(2008) Marco Ventura et al.   NATURE REVIEWS MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Analysis of bacterial activity, biomass and diversity during windrow composting

(2008) J.D.W. Adams et al.   WASTE MANAGEMENT

Bacterial community patterns and thermal analyses of composts of various origins

(2008) Susanne Klammer et al.   WASTE MANAGEMENT & RESEARCH