A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations

Polygenic analysis and targeted improvement of the complex trait of high acetic acid tolerance in the yeast Saccharomyces cerevisiae

(2016) Jean-Paul Meijnen et al.   Biotechnology for Biofuels

Techno-economic evaluation of integrated first- and second-generation ethanol production from grain and straw

(2016) Elisabeth Joelsson et al.   Biotechnology for Biofuels

Impact of Pathogen Population Heterogeneity and Stress-Resistant Variants on Food Safety

(2016) T. Abee et al.   Annual Review of Food Science and Technology

The Cytosolic pH of Individual Saccharomyces cerevisiae Cells Is a Key Factor in Acetic Acid Tolerance

(2015) Miguel Fernández-Niño et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEP3 overexpression shortens lag phase but does not alter growth rate in Saccharomyces cerevisiae exposed to acetic acid stress

(2015) Jun Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Improvement of acetic acid tolerance of Saccharomyces cerevisiae using a zinc-finger-based artificial transcription factor and identification of novel genes involved in acetic acid tolerance

(2015) Cui Ma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial bet-hedging: the power of being different

(2015) Ard Jan Grimbergen et al.   CURRENT OPINION IN MICROBIOLOGY

Function-driven single-cell genomics

(2015) Tanja Woyke et al.   Microbial Biotechnology

The fraction of cells that resume growth after acetic acid addition is a strain-dependent parameter of acetic acid tolerance inSaccharomyces cerevisiae

(2014) Steve Swinnen et al.   FEMS YEAST RESEARCH

Efficient simultaneous excision of multiple selectable marker cassettes using I-SceI-induced double-strand DNA breaks inSaccharomyces cerevisiae

(2014) Daniel Solis-Escalante et al.   FEMS YEAST RESEARCH

Physiological response ofSaccharomyces cerevisiaeto weak acids present in lignocellulosic hydrolysate

(2014) Zhongpeng Guo et al.   FEMS YEAST RESEARCH

Environmental systems biology of cold-tolerant phenotype inSaccharomycesspecies adapted to grow at different temperatures

(2014) Caroline Mary Paget et al.   MOLECULAR ECOLOGY

Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells

(2014) J. H. van Heerden et al.   SCIENCE

Short-term adaptation improves the fermentation performance of Saccharomyces cerevisiae in the presence of acetic acid at low pH

(2013) Violeta Sànchez i Nogué et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Acetic acid inhibits nutrient uptake in Saccharomyces cerevisiae: auxotrophy confounds the use of yeast deletion libraries for strain improvement

(2013) Jun Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-scale analyses of butanol tolerance in Saccharomyces cerevisiae reveal an essential role of protein degradation

(2013) Daniel González-Ramos et al.   Biotechnology for Biofuels

Genome-wide identification of genes involved in the positive and negative regulation of acetic acid-induced programmed cell death in Saccharomyces cerevisiae

(2013) Marlene Sousa et al.   BMC GENOMICS

Extreme resistance to weak-acid preservatives in the spoilage yeast Zygosaccharomyces bailii

(2013) Malcolm Stratford et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

A versatile, efficient strategy for assembly of multi-fragment expression vectors in Saccharomyces cerevisiae using 60 bp synthetic recombination sequences

(2013) Niels GA Kuijpers et al.   Microbial Cell Factories

Different response to acetic acid stress inSaccharomyces cerevisiaewild-type andl-ascorbic acid-producing strains

(2013) Francesca Martani et al.   YEAST

Molecular mechanisms of Saccharomyces cerevisiae stress adaptation and programmed cell death in response to acetic acid

(2013) Sergio Giannattasio et al.   Frontiers in Microbiology

Enhancement of Acetic Acid Tolerance in Saccharomyces cerevisiae by Overexpression of theHAA1Gene, Encoding a Transcriptional Activator

(2012) Koichi Tanaka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Advances and Developments in Strategies to Improve Strains of Saccharomyces cerevisiae and Processes to Obtain the Lignocellulosic Ethanol−A Review

(2012) C. Laluce et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

De novo detection of copy number variation by co-assembly

(2012) Jurgen F. Nijkamp et al.   BIOINFORMATICS

Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis

(2012) Stefan Kok et al.   FEMS YEAST RESEARCH

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

(2012) Jurgen F Nijkamp et al.   Microbial Cell Factories

Microfluidics for single cell analysis

(2011) Huabing Yin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Batch and continuous culture-based selection strategies for acetic acid tolerance in xylose-fermenting Saccharomyces cerevisiae

(2011) Jeremiah Wright et al.   FEMS YEAST RESEARCH

Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast

(2011) Bart Oud et al.   FEMS YEAST RESEARCH

Increasing free-energy (ATP) conservation in maltose-grown Saccharomyces cerevisiae by expression of a heterologous maltose phosphorylase

(2011) Stefan de Kok et al.   METABOLIC ENGINEERING

Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae

(2011) Tomohisa Hasunuma et al.   Microbial Cell Factories

Bioethanol production from agricultural wastes: An overview

(2011) Nibedita Sarkar et al.   RENEWABLE ENERGY

Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae

(2010) Bing-Zhi Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid

(2010) Nuno P Mira et al.   Microbial Cell Factories

Single cell analysis: the new frontier in ‘omics’

(2010) Daojing Wang et al.   TRENDS IN BIOTECHNOLOGY

Ether-zymolyase ascospore isolation procedure: an efficient protocol for ascospores isolation in Saccharomyces cerevisiae yeast

(2010) Moran Bahalul et al.   YEAST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response

(2009) Virginia D. Marks et al.   FEMS YEAST RESEARCH

Methods for Pretreatment of Lignocellulosic Biomass for Efficient Hydrolysis and Biofuel Production

(2009) Parveen Kumar et al.   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

Second-generation biofuels and local bioenergy systems

(2008) Blanca Antizar-Ladislao et al.   Biofuels Bioproducts & Biorefining-Biofpr

Pretreatment of Lignocellulosic Wastes to Improve Ethanol and Biogas Production: A Review

(2008) Mohammad Taherzadeh et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Divergent functions of three Candida albicans zinc-cluster transcription factors (CTA4, ASG1 and CTF1) complementing pleiotropic drug resistance in Saccharomyces cerevisiae

(2008) A. T. Coste et al.   MICROBIOLOGY-SGM