Landscape drivers of genomic diversity and divergence in woodland Eucalyptus

Chloroplast genome analysis of box-ironbark Eucalyptus

(2019) Khawla G. Alwadani et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species

(2018) Susan Rutherford et al.   HEREDITY

The search for loci under selection: trends, biases and progress

(2018) Collin W. Ahrens et al.   MOLECULAR ECOLOGY

Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change

(2018) Megan Ann Supple et al.   eLife

The Peril of Gene-Targeted Conservation

(2018) Marty Kardos et al.   TRENDS IN ECOLOGY & EVOLUTION

Local PCA Shows How the Effect of Population Structure Differs Along the Genome

(2018) Han Li et al.   GENETICS

Genomic Scans across Three Eucalypts Suggest that Adaptation to Aridity is a Genome-Wide Phenomenon

(2017) Dorothy A. Steane et al.   Genome Biology and Evolution

Evidence of genomic adaptation to climate in Eucalyptus microcarpa : Implications for adaptive potential to projected climate change

(2017) Rebecca Jordan et al.   MOLECULAR ECOLOGY

A comparison of individual-based genetic distance metrics for landscape genetics

(2017) A. J. Shirk et al.   Molecular Ecology Resources

kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity

(2017) Kevin D. Murray et al.   PLoS Computational Biology

On the persistence of reproductive barriers inEucalyptus: the bridging of mechanical barriers to zygote formation byF1hybrids is counteracted by intrinsic post-zygotic incompatibilities

(2016) Matthew J. Larcombe et al.   ANNALS OF BOTANY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

Landscape genomics reveals altered genome wide diversity within revegetated stands ofEucalyptus microcarpa(Grey Box)

(2016) Rebecca Jordan et al.   NEW PHYTOLOGIST

Phylogenetic approaches reveal biodiversity threats under climate change

(2016) Carlos E. González-Orozco et al.   Nature Climate Change

Unified representation of genetic variants

(2015) Adrian Tan et al.   BIOINFORMATICS

Time to get moving: assisted gene flow of forest trees

(2015) Sally N. Aitken et al.   Evolutionary Applications

Native forests and climate change: Lessons from eucalypts

(2015) T.H. Booth et al.   FOREST ECOLOGY AND MANAGEMENT

Interpreting the modern distribution of Myrtaceae using a dated molecular phylogeny

(2015) Andrew H. Thornhill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history ofEucalyptus grandis

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

Genome-wide scans reveal cryptic population structure in a dry-adapted eucalypt

(2015) Dorothy A. Steane et al.   Tree Genetics & Genomes

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Genome-wide scans detect adaptation to aridity in a widespread forest tree species

(2014) Dorothy A. Steane et al.   MOLECULAR ECOLOGY

Characterisation of Adaptive Genetic Diversity in Environmentally Contrasted Populations of Eucalyptus camaldulensis Dehnh. (River Red Gum)

(2014) Shannon Dillon et al.   PLoS One

The significance of single nucleotide polymorphisms (SNPs) in Eucalyptus globulus breeding programs

(2013) Saravanan Thavamanikumar et al.   AUSTRALIAN FORESTRY

A genetic analysis of scattered Yellow Box trees (Eucalyptus melliodora A.Cunn. ex Schauer, Myrtaceae) and their restored cohorts

(2013) Linda M. Broadhurst   BIOLOGICAL CONSERVATION

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

(2013) Rose L. Andrew et al.   EVOLUTION

Dismantling the Mantel tests

(2013) Gilles Guillot et al.   Methods in Ecology and Evolution

Eucalypts face increasing climate stress

(2013) Nathalie Butt et al.   Ecology and Evolution

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

Which environmental variables should I use in my biodiversity model?

(2012) Kristen J. Williams et al.   INTERNATIONAL JOURNAL OF GEOGRAPHICAL INFORMATION SCIENCE

Estimating landscape resistance to movement: a review

(2012) Katherine A. Zeller et al.   LANDSCAPE ECOLOGY

Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak

(2012) JOAQUÍN ORTEGO et al.   MOLECULAR ECOLOGY

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

Molecular genetic variation in a widespread forest tree species Eucalyptus obliqua (Myrtaceae) on the island of Tasmania

(2011) Justin A. Bloomfield et al.   AUSTRALIAN JOURNAL OF BOTANY

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

(2011) Jorge AP Paiva et al.   BMC GENOMICS

Assessing the benefits and risks of translocations in changing environments: a genetic perspective

(2011) Andrew R. Weeks et al.   Evolutionary Applications

The effects of age and environment on the expression of inbreeding depression in Eucalyptus globulus

(2011) J Costa e Silva et al.   HEREDITY

What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

(2011) J. L. Strasburg et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Use of resistance surfaces for landscape genetic studies: considerations for parameterization and analysis

(2010) STEPHEN F. SPEAR et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Using spatial Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance?

(2009) A. C. Frantz et al.   JOURNAL OF APPLIED ECOLOGY

Seed supply for broadscale restoration: maximizing evolutionary potential

(2008) Linda M. Broadhurst et al.   Evolutionary Applications

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Eucalyptusapplied genomics: from gene sequences to breeding tools

(2008) Dario Grattapaglia et al.   NEW PHYTOLOGIST