Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale

(2019) Henrik Krehenwinkel et al.   GigaScience

One hundred and three new species of Trigonopterus weevils from Sulawesi

(2019) Alexander Riedel et al.   ZooKeys

A validated workflow for rapid taxonomic assignment and monitoring of a national fauna of bees (Apiformes) using high throughput DNA barcoding

(2019) Thomas J. Creedy et al.   Molecular Ecology Resources

A Rapid and Accurate MinION-Based Workflow for Tracking Species Biodiversity in the Field

(2019) Maestri et al.   Genes

How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?

(2018) Nigel E. Stork   Annual Review of Entomology

A Sequel to Sanger: amplicon sequencing that scales

(2018) Paul D. N. Hebert et al.   BMC GENOMICS

Sorting specimen-rich invertebrate samples with cost-effective NGS barcodes: Validating a reverse workflow for specimen processing

(2018) Wendy Y. Wang et al.   Molecular Ecology Resources

A MinION™-based pipeline for fast and cost-effective DNA barcoding

(2018) Amrita Srivathsan et al.   Molecular Ecology Resources

Towards holomorphology in entomology: rapid and cost-effective adult-larva matching using NGS barcodes

(2018) Darren Yeo et al.   SYSTEMATIC ENTOMOLOGY

Remarkable fly (Diptera) diversity in a patch of Costa Rican cloud forest: Why inventory is a vital science

(2018) ART BORKENT et al.   ZOOTAXA

Scaling up DNA barcoding - Primer sets for simple and cost efficient arthropod systematics by multiplex PCR and Illumina amplicon sequencing

(2018) Henrik Krehenwinkel et al.   Methods in Ecology and Evolution

Quantifying the unquantifiable: why Hymenoptera, not Coleoptera, is the most speciose animal order

(2018) Andrew A. Forbes et al.   BMC ECOLOGY

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

(2018) Aaron Pomerantz et al.   GigaScience

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

On site DNA barcoding by nanopore sequencing

(2017) Michele Menegon et al.   PLoS One

Biodiversity research requires more boots on the ground

(2017) Edward O. Wilson   Nature Ecology & Evolution

Counting animal species with DNA barcodes: Canadian insects

(2016) Paul D. N. Hebert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rarity and Incomplete Sampling in DNA-Based Species Delimitation

(2016) Dirk Ahrens et al.   SYSTEMATIC BIOLOGY

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

(2016) Ivan Sović et al.   Nature Communications

Big data from tiny flies: patterns revealed from over 42,000 phorid flies (Insecta: Diptera: Phoridae) collected over one year in Los Angeles, California, USA

(2016) Brian V. Brown et al.   URBAN ECOSYSTEMS

$1 DNA barcodes for reconstructing complex phenomes and finding rare species in specimen-rich samples

(2015) Rudolf Meier et al.   CLADISTICS

Opportunity in our Ignorance: Urban Biodiversity Study Reveals 30 New Species and One New Nearctic Record for Megaselia (Diptera: Phoridae) in Los Angeles (California, USA)

(2015) EMILY A. HARTOP et al.   ZOOTAXA

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

(2015) Shadi Shokralla et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

‘Direct PCR’ optimization yields a rapid, cost-effective, nondestructive and efficient method for obtaining DNA barcodes without DNA extraction

(2014) Wing Hing Wong et al.   Molecular Ecology Resources

Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)

(2014) Amrita Srivathsan et al.   Molecular Ecology Resources

Ninety-eight new species of Trigonopterus weevils from Sundaland and the Lesser Sunda Islands

(2014) Alexander Riedel et al.   ZooKeys

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Integrative taxonomy on the fast track - towards more sustainability in biodiversity research

(2013) Alexander Riedel et al.   Frontiers in Zoology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

One hundred and one new species of Trigonopterus weevils from New Guinea

(2013) Alexander Riedel et al.   ZooKeys

Description of Four New Species ofZygomyiaWinnertz from Ethiopia and Uganda (Diptera: Mycetophilidae)

(2012) Olavi Kurina   AFRICAN INVERTEBRATES

DNA Barcoding for Community Ecology - How to Tackle a Hyperdiverse, Mostly Undescribed Melanesian Fauna

(2012) Rene Tänzler et al.   PLoS One

Is the COI barcoding gene involved in speciation through intergenomic conflict?

(2011) Shiyang Kwong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Why Worry about How Many Species and Their Loss?

(2011) Robert M. May   PLOS BIOLOGY

The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification

(2008) Rudolf Meier et al.   SYSTEMATIC BIOLOGY