A MinION™-based pipeline for fast and cost-effective DNA barcoding

A Sequel to Sanger: amplicon sequencing that scales

(2018) Paul D. N. Hebert et al.   BMC GENOMICS

Sorting specimen-rich invertebrate samples with cost-effective NGS barcodes: Validating a reverse workflow for specimen processing

(2018) Wendy Y. Wang et al.   Molecular Ecology Resources

Towards holomorphology in entomology: rapid and cost-effective adult-larva matching using NGS barcodes

(2018) Darren Yeo et al.   SYSTEMATIC ENTOMOLOGY

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

On site DNA barcoding by nanopore sequencing

(2017) Michele Menegon et al.   PLoS One

Field-based species identification of closely-related plants using real-time nanopore sequencing

(2017) Joe Parker et al.   Scientific Reports

Real-time, portable genome sequencing for Ebola surveillance

(2016) Joshua Quick et al.   NATURE

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

(2016) Ivan Sović et al.   Nature Communications

Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing

(2016) Jongoh Shin et al.   Scientific Reports

INC-Seq: accurate single molecule reads using nanopore sequencing

(2016) Chenhao Li et al.   GigaScience

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

(2016) Alfonso Benítez-Páez et al.   GigaScience

$1 DNA barcodes for reconstructing complex phenomes and finding rare species in specimen-rich samples

(2015) Rudolf Meier et al.   CLADISTICS

Next generation sequencing and its applications in forensic genetics

(2015) Claus Børsting et al.   Forensic Science International-Genetics

DNA Barcoding Identifies Illegal Parrot Trade: Figure 1.

(2015) Priscila F. M. Gonçalves et al.   JOURNAL OF HEREDITY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

PCR heads into the field

(2015) Vivien Marx   NATURE METHODS

A complete bacterial genome assembled de novo using only nanopore sequencing data

(2015) Nicholas J Loman et al.   NATURE METHODS

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

(2015) Alexander L. Greninger et al.   Genome Medicine

Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing

(2015) Adam D. Hargreaves et al.   PeerJ

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

(2015) Andy Kilianski et al.   GigaScience

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

(2015) Shadi Shokralla et al.   Scientific Reports

A DNA Mini-Barcoding System for Authentication of Processed Fish Products

(2015) Shadi Shokralla et al.   Scientific Reports

‘Direct PCR’ optimization yields a rapid, cost-effective, nondestructive and efficient method for obtaining DNA barcodes without DNA extraction

(2014) Wing Hing Wong et al.   Molecular Ecology Resources

A first look at the Oxford Nanopore MinION sequencer

(2014) Alexander S. Mikheyev et al.   Molecular Ecology Resources

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Barcoding of biting midges in the genusCulicoides: a tool for species determination

(2012) M. ANDER et al.   MEDICAL AND VETERINARY ENTOMOLOGY

On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature

(2011) Amrita Srivathsan et al.   CLADISTICS

Is the COI barcoding gene involved in speciation through intergenomic conflict?

(2011) Shiyang Kwong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular techniques for pathogen identification and fungus detection in the environment

(2011) Clement K.M. Tsui et al.   IMA Fungus

Express barcodes: racing from specimen to identification

(2009) NATALIA V. IVANOVA et al.   Molecular Ecology Resources