标题
MiPepid: MicroPeptide identification tool using machine learning
作者
关键词
-
出版物
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-11-08
DOI
10.1186/s12859-019-3033-9
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- MOXI Is a Mitochondrial Micropeptide That Enhances Fatty Acid β-Oxidation
- (2018) Catherine A. Makarewich et al. Cell Reports
- Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics
- (2018) Fouzia Yeasmin et al. Frontiers in Genetics
- Mining for Small Translated ORFs
- (2017) Anastasia Chugunova et al. JOURNAL OF PROTEOME RESEARCH
- A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth
- (2017) Jin-Zhou Huang et al. MOLECULAR CELL
- Classification and function of small open reading frames
- (2017) Juan-Pablo Couso et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- An update on sORFs.org: a repository of small ORFs identified by ribosome profiling
- (2017) Volodimir Olexiouk et al. NUCLEIC ACIDS RESEARCH
- CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
- (2017) Yu-Jian Kang et al. NUCLEIC ACIDS RESEARCH
- Control of muscle formation by the fusogenic micropeptide myomixer
- (2017) Pengpeng Bi et al. SCIENCE
- Mining for Micropeptides
- (2017) Catherine A. Makarewich et al. TRENDS IN CELL BIOLOGY
- LncRNA-Six1 Encodes a Micropeptide to Activate Six1 in Cis and Is Involved in Cell Proliferation and Muscle Growth
- (2017) Bolin Cai et al. Frontiers in Physiology
- Ribosome Footprint Profiling of Translation throughout the Genome
- (2016) Nicholas T. Ingolia CELL
- mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide
- (2016) Akinobu Matsumoto et al. NATURE
- The state of play in higher eukaryote gene annotation
- (2016) Jonathan M. Mudge et al. NATURE REVIEWS GENETICS
- A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle
- (2016) B. R. Nelson et al. SCIENCE
- Widespread control of calcium signaling by a family of SERCA-inhibiting micropeptides
- (2016) D. M. Anderson et al. Science Signaling
- Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
- (2016) Anil Raj et al. eLife
- Widespread control of calcium signaling by a family of SERCA-inhibiting micropeptides
- (2016) D. M. Anderson et al. Science Signaling
- A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance
- (2015) Douglas M. Anderson et al. CELL
- The Mitochondrial-Derived Peptide MOTS-c Promotes Metabolic Homeostasis and Reduces Obesity and Insulin Resistance
- (2015) Changhan Lee et al. Cell Metabolism
- sORFs.org: a repository of small ORFs identified by ribosome profiling
- (2015) Volodimir Olexiouk et al. NUCLEIC ACIDS RESEARCH
- Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins
- (2015) Zhe Ji et al. eLife
- uPEPperoni: An online tool for upstream open reading frame location and analysis of transcript conservation
- (2014) Adam Skarshewski et al. BMC BIOINFORMATICS
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- Everything old is new again: (linc)RNAs make proteins!
- (2014) S. M. Cohen EMBO JOURNAL
- Ribosome profiling: new views of translation, from single codons to genome scale
- (2014) Nicholas T. Ingolia NATURE REVIEWS GENETICS
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Long non-coding RNAs as a source of new peptides
- (2014) Jorge Ruiz-Orera et al. eLife
- Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
- (2013) Jeroen Crappé et al. BMC GENOMICS
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- Current status and new features of the Consensus Coding Sequence database
- (2013) Catherine M. Farrell et al. NUCLEIC ACIDS RESEARCH
- CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
- (2013) Liguo Wang et al. NUCLEIC ACIDS RESEARCH
- Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
- (2013) Liang Sun et al. NUCLEIC ACIDS RESEARCH
- Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames
- (2013) E. G. Magny et al. SCIENCE
- Conservation vs. variation of dinucleotide frequencies across bacterial and archaeal genomes: evolutionary implications
- (2013) Hang Zhang et al. Frontiers in Microbiology
- Tracking and coordinating an international curation effort for the CCDS Project
- (2012) R. A. Harte et al. Database-The Journal of Biological Databases and Curation
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- sORF finder: a program package to identify small open reading frames with high coding potential
- (2009) Kousuke Hanada et al. BIOINFORMATICS
- The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
- (2009) K. D. Pruitt et al. GENOME RESEARCH
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
- (2008) Minghui Jiang et al. BMC BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search