Article
Chemistry, Multidisciplinary
Yongzhen Li, Banghao Wu, Yumeng Zhang, Lanxuan Liu, Linquan Bai, Ting Shi
Summary: This study developed a computational model and performed mutation experiments to improve the thermostability of streptomyces mobaraensis transglutaminase (smTG). The results showed that the selected mutants exhibited enhanced enzymatic activity and improved thermostability through interactions and flexibility changes. The study provides a rational design strategy and a better understanding of protein thermostability for industrial applications.
NEW JOURNAL OF CHEMISTRY
(2023)
Article
Agriculture, Multidisciplinary
Xiaoqiang Yin, Yangyang Li, Jingwen Zhou, Shengqi Rao, Guocheng Du, Jian Chen, Song Liu
Summary: This study utilized random mutagenesis and site-directed genetic modification to enhance the production of TGase in Streptomyces mobaraensis. A mutant (smY2019) with a 5.5-fold increase in TGase yield was successfully screened, and two additional TGase expression cassettes were integrated into its genome, resulting in a recombinant strain (smY2019-3C) with a 103% increase in TGase production compared to smY2019. The smY2019-3C strain with 40 U/mL of TGase yield could be a suitable candidate for industrial production of TGase.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2021)
Article
Biotechnology & Applied Microbiology
Xiaoqiang Yin, Shengqi Rao, Jingwen Zhou, Guocheng Du, Jian Chen, Song Liu
Summary: By regulating the activity of TGase-activating protease (TAP) and extracellular expression of zymogen in Streptomyces mobaraensis, the production of TGase can be improved, and the fermentation period can be shortened. In addition, the addition of NH4+ nitrogen source can enhance the activity of TAP and the storage stability of crude enzyme.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2022)
Article
Agriculture, Multidisciplinary
Penghui Yang, Xinglong Wang, Jiacai Ye, Shengqi Rao, Jingwen Zhou, Guocheng Du, Song Liu
Summary: Researchers improved the thermostability of Streptomyces mobaraenesis transglutaminase by modifying flexible regions and obtained a mutant FRAPD-TGm2A with enhanced enzyme activity.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2023)
Article
Agricultural Engineering
Syeda Warisul Fatima, Sunil K. Khare
Summary: The study describes the regulatory mechanism of microbial Transglutaminase (MTGase) biosynthesis from Streptomyces mobaraensis and the effect of key regulators on maximizing production. Through the optimization by combinational supplementation of key modulators, there was a significant increase in productivity and activity of MTGase.
BIORESOURCE TECHNOLOGY
(2021)
Article
Agriculture, Multidisciplinary
Xinglong Wang, Jianhui Du, Beichen Zhao, Haiyan Wang, Shengqi Rao, Guocheng Du, Jingwen Zhou, Jian Chen, Song Liu
Summary: This study significantly improved the catalytic properties of transglutaminase TGm1 by performing virtual proline scan and saturation mutagenesis to obtain variants FRAPD-TGm2 and FRAPD-TGm3 with enhanced stability and activity. These variants showed increased half-life, melting temperature, and specific activity compared to TGm1, making them robust candidates for transglutaminase application.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2021)
Article
Agriculture, Multidisciplinary
Xinglong Wang, Jianhui Du, Beichen Zhao, Haiyan Wang, Shengqi Rao, Guocheng Du, Jingwen Zhou, Jian Chen, Song Liu
Summary: The study significantly improved the catalytic properties of a highly stabilized variant of transglutaminase through virtual proline scan and saturation mutagenesis, resulting in FRAPD-TGm3 which showed enhanced thermostability and activity, making it a robust candidate for transglutaminase application.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2021)
Article
Biochemical Research Methods
Hongjing Wang, Haiqing Chen, Qingbin Li, Fan Yu, Yaru Yan, Shuang Liu, Jian Tian, Jianxin Tan
Summary: In this study, the thermostability of transglutaminase was improved by introducing artificial disulfide bonds through rational enzyme engineering. A mutant with enhanced thermostability and activity was selected and characterized, showing higher half-life and melting temperature compared to the wild-type. The results demonstrated the effectiveness of rational design in improving the thermostability of transglutaminase and other food enzymes for food processing.
PROTEIN EXPRESSION AND PURIFICATION
(2022)
Article
Biochemistry & Molecular Biology
Yimin Huang, Minfei Jin, Wenjun Yan, Qihan Wu, Yanning Niu, Chunjing Zou, Caifeng Jia, Zhongyi Chang, Jing Huang, Deming Jiang, Hongliang Gao
Summary: UV mutagenesis was used to create a mutant of Streptomyces mobaraensis TX1 with a high TGase yield, showing a 2.15-fold increase compared to the wild-type strain. The transcriptional level of the transglutaminase gene increased significantly in the mutant strain, primarily due to a point mutation in the promoter region, leading to the high yield of microbial transglutaminase.
PROCESS BIOCHEMISTRY
(2022)
Article
Biotechnology & Applied Microbiology
Jialin Li, Luying Jiang, Xue Cao, Yifan Wu, Fuping Lu, Fufeng Liu, Yu Li, Yihan Liu
Summary: The study successfully obtained a variant, G95P, with 9-fold enhancement in specific activity through the construction of a mutant library using error-prone PCR.
ENZYME AND MICROBIAL TECHNOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Xinglong Wang, Beichen Zhao, Jianhui Du, Yameng Xu, Xuewen Zhu, Jingwen Zhou, Shengqi Rao, Guocheng Du, Jian Chen, Song Liu
Summary: This study aimed to improve the thermostability and secretory expression of Streptomyces mobaraenesis transglutaminase (smTG) in E. coli. A combined strategy was employed, including N-terminal modification, co-expression with chaperones, mRNA folding energy optimization of signal peptide, and lipoprotein deletion. The results showed significant improvements in the activity and secretion of smTG, which are of great importance for enzyme application and evolution.
MICROBIAL CELL FACTORIES
(2022)
Review
Food Science & Technology
Zhaolin Huang, Dawei Ni, Ziwei Chen, Yingying Zhu, Wenli Zhang, Wanmeng Mu
Summary: Enzymes can produce high-quality food with low pollution, high function, high acceptability, and medical aid. However, most enzymes, in their native form, do not meet the industrial requirements. Sequence-based and structure-based methods are the two main strategies used for enzyme modification. Molecular Dynamics (MD) simulation, as a comprehensive technology, has been widely used for structure information analysis and enzyme modification. This review focuses on the progress and development of MD simulation, its application in various food enzymes for thermostability and catalytic improvement, and the limitations and prospects of MD simulation in food enzyme modification research.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
(2023)
Article
Food Science & Technology
Lilang Li, Yonghua Wang, Ruiguo Cui, Fanghua Wang, Dongming Lan
Summary: A more thermostable variant of Malassezia globose lipase (SMG1) was designed, which showed improved activity towards diacylglycerols (DAGs) and increased half-life. The immobilized M5D variant demonstrated higher DAG content and residual activity in esterification reactions.
Article
Biotechnology & Applied Microbiology
Xin Cui, Xin Yuan, Shunyi Li, Xinlin Hu, Jing Zhao, Guimin Zhang
Summary: In this study, rational design was used to improve the specific activity and thermostability of alpha-amylase BLA from Bacillus licheniformis. Mutant Q360C exhibited significantly improved activity and thermostability, suggesting that residue 360 may serve as a hotspot for engineering enzymes in the GH13 superfamily.
BIOPROCESS AND BIOSYSTEMS ENGINEERING
(2022)
Article
Biochemistry & Molecular Biology
Licheng Zhou, Qing Meng, Ran Zhang, Bo Jiang, Qun Wu, Jingjing Chen, Tao Zhang
Summary: In this study, a comprehensive strategy was proposed to improve the thermostability of alginate lyase with strict substrate specificity. Through sequence-based and structure-based analysis, as well as computer-aided Delta Delta Gfold value calculation, four point mutations were selected and combined to generate a mutant with increased thermostability and retained enzyme activity.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2023)
Article
Biotechnology & Applied Microbiology
Yiran Qu, Innocent Bekard, Ben Hunt, Jamie Black, Louis Fabri, Sally L. Gras, Sandra. E. Kentish
Summary: This study compares the performance of a nanofiber device and a resin column for antibody capture. The nanofiber device has a larger housing volume and lower binding capacity, but comparable eluate purity to the resin column. It shows high stability, can be used for multiple cycles, and maintains consistent eluate quality when scaled up. The use of a single nanofiber device can significantly reduce costs compared to a resin column, especially when the number of batches is limited.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Brandon Moore, Christos Georgakis, Chris Antoniou, Sarwat Khattak
Summary: Fed-batch cell culture processes are commonly used in biomanufacturing due to their simplicity and applicability in cGMP environments. However, the challenge lies in the changing physiochemical conditions within the bioreactor as the cell density changes. Traditional response surface models (RSMs) are commonly used for optimization but are limited by their use of time-invariant factors. Dynamic RSM (DRSM) models can predict the time-dependent impact of process inputs, allowing for optimization of process operations that change over time.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Lin Li, Yunfan Bai, Chuhua Qi, Yile Du, Xiaoxiao Ma, Yutong Li, Pingping Wu, Shuangli Chen, Sijing Zhang
Summary: A succinic anhydride-modified apple pomace (SAMAP) was synthesized to address environmental issues caused by the accumulation of apple pomace and effectively treat heavy metal ions. SAMAP exhibited high adsorption capacity for Cu(II) and Pb(II), suggesting its potential application in wastewater treatment.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Peter Satzer
Summary: Water for injection (WFI) production in the biopharmaceutical industry consumes excessive amounts of water and energy. Recycling buffers can potentially save up to 90% of resources, but achieving the full theoretical potential is impossible when a risk-aware design is used. Universal risk-based assessment is important for regulatory authorities to consider the implementation of such a strategy.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Gaoya Sun, Lingkai Jin, Guangxue Wang, Xiaoge Wang, Jin Huang
Summary: In this study, heterologous expression and homologous overexpression of ABC transporter proteins AatA and MdlB were found to improve butyric acid production in C. tyrobutyricum. The overexpression of these proteins upregulated the expression levels of key enzymes in the acetate synthesis pathway and promoted the synthesis and secretion of acetic acid. Additionally, the increase in ATPase activity facilitated sugar utilization, induced extracellular secretion of acetate, and shortened fermentation periods.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Taiki Okamura, Rina Aritomi, Takuya Matsumoto, Ryosuke Yamada, Hidehiko Hirakawa, Hiroyasu Ogino
Summary: In this study, proline was introduced to improve the stability of putidaredoxin reductase (PdR) in the Pseudomonas putida cytochrome P450 system. It was found that PdR_T221P had a longer half-life at high temperatures compared to wild-type PdR, but a shorter half-life in the presence of methanol. Molecular dynamics simulations supported these findings.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Yuying Hu, Xiaofan Wang, Shihao Zhang, Zimu Liu, Tengfang Hu, Xin Wang, Xiaoming Peng, Hongling Dai, Jing Wu, Fengping Hu
Summary: This study investigates the effect of iron-carbon micro-electrolysis (ICME) materials on high-solid anaerobic digestion (HSAD). The results show that ICME materials promote methane production in HSAD by increasing the attachment area of microorganisms and facilitating symbiotic metabolism of certain bacterial species. This study provides new insights into microbial mechanisms and enhances our understanding of ICME material enhancement in HSAD.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Jibao Liu, Yufeng Xu, Yuansong Wei
Summary: This study investigated the role of sludge rheology in anaerobic digestion (AD) and found that rheological properties increased with the increase of solid content, resulting in a negative effect on methane production. An extended ADM1 model revealed that enhanced sludge rheological properties increased mass diffusion resistance and reduced uptake rate of acetate.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Xiaoyan Liu, Zongze Chen, Dewen Kong, Xinying Zhang, Chuanhua Wang, Yongqi Wang
Summary: This study explored the role of intracellular and extracellular enzymes of Acinetobacter baumannii and Talaromyces sp. in the degradation of crude oil. The extracellular enzymes of Talaromyces sp. were more effective in degrading n-alkanes, while those of Acinetobacter baumannii had a better effect on aromatic hydrocarbons. The degradation enzyme systems of both bacteria and fungi complemented each other, improving the overall degradation ability.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Jing Dong, Lingli Xu, Yuxiang Liu, Li Ren, Ke Yuan
Summary: The utilization of biochar-immobilized microorganisms is an effective method for eliminating phenol from water. The high susceptibility of bacteria to environmental factors is a challenge for practical implementation. In this study, biochar was used to reduce microbial susceptibility and enhance phenol removal. The addition of biochar altered the dominant species of phenol-degrading bacteria and response surface analysis indicated the significant influence of biochar pyrolysis temperature and experimental temperature on phenol removal rate.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Zibin Pan, Mengying Liu, Zuliang Chen
Summary: This study successfully removed metalloids and heavy metals from acid mine drainage (AMD) using bio-synthesized Fe/Cu nanoparticles (Fe/Cu NPs). The Fe/Cu NPs showed high removal capacities and the presence of organic substances contributed to their stability.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Guangbing Liu, Han Zhang, Jincan Huang, Lu Zhang, Teng Zhang, Xuemin Yu, Weijing Liu, Chunkai Huang
Summary: This study investigated the effect of Fenton pre-treatment on the treatment efficiency of printing and dyeing wastewater (PDW) using two anaerobic/aerobic-membrane bioreactors (A/O-MBRs). The results showed that Fenton pre-treatment significantly improved the removal efficiency of COD and AOX in PDW, and reduced membrane fouling. The Shannon indices and metagenomics analysis indicated that the microbial diversity in anaerobic flocs was higher than that in aerobic flocs, and EC3.1.1.45 and pcaI were identified as key functional genes.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Lidia Borgosz, Duygu Dikicioglu
Summary: The Industrial Internet of Things (IIoT) is a system that connects devices and provides real-time insight into industrial processes. However, the complexity and regulatory requirements of the biomanufacturing sector make it challenging to implement IIoT. There is a need for universal solutions to overcome this challenge and advance the field of biomanufacturing.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Yajie Li, Weikang Kong, Yuyao Zhang, Huarui Zhou, Hongbo Liu, Salma Tabassum
Summary: In this study, the iron-carbon multi-micro electric field coupling anaerobic co-digestion technique was used to treat coal gasification wastewater (CGW). The experimental results showed that under optimal operating conditions, this technique can significantly reduce the toxicity of the wastewater and achieve high removal efficiencies. Additionally, the analysis of microbial communities revealed that the coupling system promotes direct interspecies electron transfer.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)
Article
Biotechnology & Applied Microbiology
Aparecido Nivaldo Modenes, Debora Gozzi Fernandes, Daniela Estelita Goes Trigueros, Matheus Guilherme Amador, Fernando Rodolfo Espinoza-Quinones, Taysa de Souza Braniz, Adilson Ricken Schuelter, Glacy Jaqueline da Silva, Lucimar Pereira Bonett
Summary: This study aimed to systematically remove organic pollutants from raw dairy wastewater with high concentrations of COD, TOC, and TN using Poterioochromonas malhamensis algae strains. The results showed that the biomass yield rate using FP-PBRs was 10% higher than tubular PBRs, and the organic pollution in wastewater was significantly reduced with a decrease of about 98% in COD, 95% in TN, and 92% in TOC.
BIOCHEMICAL ENGINEERING JOURNAL
(2024)