标题
Cajal body function in genome organization and transcriptome diversity
作者
关键词
-
出版物
BIOESSAYS
Volume 38, Issue 12, Pages 1197-1208
出版商
Wiley
发表日期
2016-10-21
DOI
10.1002/bies.201600144
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Transcription Dynamics in Living Cells
- (2016) Tineke L. Lenstra et al. Annual Review of Biophysics
- Architectural RNAs (arcRNAs): A class of long noncoding RNAs that function as the scaffold of nuclear bodies
- (2016) Takeshi Chujo et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II
- (2016) Fernando Carrillo Oesterreich et al. CELL
- Nucleation by rRNA Dictates the Precision of Nucleolus Assembly
- (2016) Hanieh Falahati et al. CURRENT BIOLOGY
- Cycling in the nucleus: regulation of RNA 3′ processing and nuclear organization of replication-dependent histone genes
- (2016) Valentina Romeo et al. CURRENT OPINION IN CELL BIOLOGY
- Concentrating pre-mRNA processing factors in the histone locus body facilitates efficient histone mRNA biogenesis
- (2016) Deirdre C. Tatomer et al. JOURNAL OF CELL BIOLOGY
- Nuclear bodies: Built to boost
- (2016) Iain A. Sawyer et al. JOURNAL OF CELL BIOLOGY
- Locus-specific gene repositioning in prostate cancer
- (2016) Marc Leshner et al. MOLECULAR BIOLOGY OF THE CELL
- Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing
- (2016) Marina Falaleeva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population-based 3D genome structure analysis reveals driving forces in spatial genome organization
- (2016) Harianto Tjong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Specific genomic cues regulate Cajal body assembly
- (2016) Iain A. Sawyer et al. RNA Biology
- The Spliceosome: The Ultimate RNA Chaperone and Sculptor
- (2016) Panagiotis Papasaikas et al. TRENDS IN BIOCHEMICAL SCIENCES
- Cajal bodies are linked to genome conformation
- (2016) Qiuyan Wang et al. Nature Communications
- Recent advances in dynamic m6A RNA modification
- (2016) Guangchao Cao et al. Open Biology
- The reciprocal regulation between splicing and 3′-end processing
- (2016) Daisuke Kaida Wiley Interdisciplinary Reviews-RNA
- Spectral imaging to visualize higher-order genomic organization
- (2016) Iain A. Sawyer et al. Nucleus
- Spectral imaging to visualize higher-order genomic organization
- (2016) Iain A. Sawyer et al. Nucleus
- Understanding Spatial Genome Organization: Methods and Insights
- (2016) Vijay Ramani et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Gene Positioning Effects on Expression in Eukaryotes
- (2015) Huy Q. Nguyen et al. Annual Review of Genetics
- Nuclear bodies: the emerging biophysics of nucleoplasmic phases
- (2015) Lian Zhu et al. CURRENT OPINION IN CELL BIOLOGY
- Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell
- (2015) Takashi Nagano et al. Nature Protocols
- RNA mis-splicing in disease
- (2015) Marina M. Scotti et al. NATURE REVIEWS GENETICS
- Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization
- (2015) Mauro D. Locati et al. NUCLEIC ACIDS RESEARCH
- Defective histone supply causes changes in RNA polymerase II elongation rate and cotranscriptional pre-mRNA splicing
- (2015) Silvia Jimeno-González et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA: master or servant?
- (2015) Karla M. Neugebauer RNA
- Alternative mRNA transcription, processing, and translation: insights from RNA sequencing
- (2015) Eleonora de Klerk et al. TRENDS IN GENETICS
- MED26 regulates the transcription of snRNA genes through the recruitment of little elongation complex
- (2015) Hidehisa Takahashi et al. Nature Communications
- SART3-Dependent Accumulation of Incomplete Spliceosomal snRNPs in Cajal Bodies
- (2015) Ivan Novotný et al. Cell Reports
- Widespread intron retention diversifies most cancer transcriptomes
- (2015) Heidi Dvinge et al. Genome Medicine
- Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods
- (2015) Jeanette Baran-Gale et al. Frontiers in Genetics
- Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences
- (2014) Patricia Heyn et al. BIOESSAYS
- Genes with a large intronic burden show greater evolutionary conservation on the protein level
- (2014) Olga Gorlova et al. BMC EVOLUTIONARY BIOLOGY
- Pronounced cohabitation of active immunoglobulin genes from three different chromosomes in transcription factories during maximal antibody synthesis
- (2014) S.-K. Park et al. GENES & DEVELOPMENT
- Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes
- (2014) Søren Lykke-Andersen et al. GENES & DEVELOPMENT
- Widespread intron retention in mammals functionally tunes transcriptomes
- (2014) Ulrich Braunschweig et al. GENOME RESEARCH
- A role for the Cajal-body-associated SUMO isopeptidase USPL1 in snRNA transcription mediated by RNA polymerase II
- (2014) S. Hutten et al. JOURNAL OF CELL SCIENCE
- The Coilin Interactome Identifies Hundreds of Small Noncoding RNAs that Traffic through Cajal Bodies
- (2014) Martin Machyna et al. MOLECULAR CELL
- Coupling mRNA processing with transcription in time and space
- (2014) David L. Bentley NATURE REVIEWS GENETICS
- Novel regulatory principles of the spliceosomal Brr2 RNA helicase and links to retinal disease in humans
- (2014) Sina Mozaffari-Jovin et al. RNA Biology
- Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes
- (2014) Bernd Stadelmayer et al. Nature Communications
- Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3′-UTR landscape across seven tumour types
- (2014) Zheng Xia et al. Nature Communications
- Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes
- (2013) Michael H Farkas et al. BMC GENOMICS
- Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes
- (2013) Geeta J. Narlikar et al. CELL
- Orchestrated Intron Retention Regulates Normal Granulocyte Differentiation
- (2013) Justin J.-L. Wong et al. CELL
- RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock
- (2013) Jean-Michel Fustin et al. CELL
- Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories
- (2013) Dietmar Rieder et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- A Sequence in the Drosophila H3-H4 Promoter Triggers Histone Locus Body Assembly and Biosynthesis of Replication-Coupled Histone mRNAs
- (2013) Harmony R. Salzler et al. DEVELOPMENTAL CELL
- Role of small nuclear RNAs in eukaryotic gene expression
- (2013) Saba Valadkhan et al. Essays in Biochemistry
- U1A Regulates 3′ Processing of the Survival Motor Neuron mRNA
- (2013) Eileen Workman et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Identifying gene locus associations with promyelocytic leukemia nuclear bodies using immuno-TRAP
- (2013) Reagan W. Ching et al. JOURNAL OF CELL BIOLOGY
- The Little Elongation Complex Functions at Initiation and Elongation Phases of snRNA Gene Transcription
- (2013) Deqing Hu et al. MOLECULAR CELL
- Molecular crowding shapes gene expression in synthetic cellular nanosystems
- (2013) Cheemeng Tan et al. Nature Nanotechnology
- Functional implications of genome topology
- (2013) Giacomo Cavalli et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Human snRNA genes use polyadenylation factors to promote efficient transcription termination
- (2013) Dawn O’Reilly et al. NUCLEIC ACIDS RESEARCH
- Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors
- (2013) Andreas R. Gruber et al. Wiley Interdisciplinary Reviews-RNA
- Crowding Effects on the Formation and Maintenance of Nuclear Bodies: Insights from Molecular-Dynamics Simulations of Simple Spherical Model Particles
- (2012) Eun Jin Cho et al. BIOPHYSICAL JOURNAL
- DNA Sequence-Dependent Compartmentalization and Silencing of Chromatin at the Nuclear Lamina
- (2012) Joseph M. Zullo et al. CELL
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Nuclear bodies: multifunctional companions of the genome
- (2012) Miroslav Dundr CURRENT OPINION IN CELL BIOLOGY
- Transcription factories: genetic programming in three dimensions
- (2012) Lucas Brandon Edelman et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The integrator complex is required for integrity of Cajal bodies
- (2012) H. Takata et al. JOURNAL OF CELL SCIENCE
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- In Vitro RNase and Nucleic Acid Binding Activities Implicate Coilin in U snRNA Processing
- (2012) Hanna J. Broome et al. PLoS One
- Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming
- (2012) H. Berndt et al. RNA
- Transcription factories
- (2012) Dietmar Rieder et al. Frontiers in Genetics
- N6-methyl-adenosine (m6A) in RNA: An Old Modification with A Novel Epigenetic Function
- (2012) Yamei Niu et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Seed and grow: a two-step model for nuclear body biogenesis: Figure 1.
- (2011) Miroslav Dundr JOURNAL OF CELL BIOLOGY
- Ultrastructural study of transcription factories in mouse erythroblasts
- (2011) C. H. Eskiw et al. JOURNAL OF CELL SCIENCE
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
- Nucleation of nuclear bodies by RNA
- (2011) Sergey P. Shevtsov et al. NATURE CELL BIOLOGY
- Biogenesis and function of nuclear bodies
- (2011) Yuntao S. Mao et al. TRENDS IN GENETICS
- snRNA 3′ end formation: the dawn of the Integrator complex
- (2010) Jiandong Chen et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Regulation of snRNA gene expression by theDrosophila melanogastersmall nuclear RNA activating protein complex (DmSNAPc)
- (2010) Ko-Hsuan Hung et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- 3D shortcuts to gene regulation
- (2010) Ofir Hakim et al. CURRENT OPINION IN CELL BIOLOGY
- In vivo kinetics of U4/U6·U5 tri-snRNP formation in Cajal bodies
- (2010) Ivan Novotný et al. MOLECULAR BIOLOGY OF THE CELL
- Deciphering the splicing code
- (2010) Yoseph Barash et al. NATURE
- Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs
- (2010) Yuntao S. Mao et al. NATURE CELL BIOLOGY
- Making the message clear: visualizing mRNA localization
- (2010) Timothy T. Weil et al. TRENDS IN CELL BIOLOGY
- Interchromosomal association and gene regulation in trans
- (2010) Adam Williams et al. TRENDS IN GENETICS
- The Cajal Body and Histone Locus Body
- (2010) Z. Nizami et al. Cold Spring Harbor Perspectives in Biology
- Chromosome Territories
- (2010) T. Cremer et al. Cold Spring Harbor Perspectives in Biology
- Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells
- (2009) Christine Mayr et al. CELL
- Nuclear Bodies: Random Aggregates of Sticky Proteins or Crucibles of Macromolecular Assembly?
- (2009) A. Gregory Matera et al. DEVELOPMENTAL CELL
- Cajal-body formation correlates with differential coilin phosphorylation in primary and transformed cell lines
- (2009) S. M. Hearst et al. JOURNAL OF CELL SCIENCE
- Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cells
- (2009) Narasimharao V. Marella et al. JOURNAL OF CELLULAR PHYSIOLOGY
- An Architectural Role for a Nuclear Noncoding RNA: NEAT1 RNA Is Essential for the Structure of Paraspeckles
- (2009) Christine M. Clemson et al. MOLECULAR CELL
- Expression of human snRNA genes from beginning to end
- (2008) Sylvain Egloff et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- The Meaning of Gene Positioning
- (2008) Takumi Takizawa et al. CELL
- SMN Deficiency Causes Tissue-Specific Perturbations in the Repertoire of snRNAs and Widespread Defects in Splicing
- (2008) Zhenxi Zhang et al. CELL
- Regulation of Multiple Core Spliceosomal Proteins by Alternative Splicing-Coupled Nonsense-Mediated mRNA Decay
- (2008) A. L. Saltzman et al. MOLECULAR AND CELLULAR BIOLOGY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Association between the Igk and Igh immunoglobulin loci mediated by the 3′ Igk enhancer induces 'decontraction' of the Igh locus in pre–B cells
- (2008) Susannah L Hewitt et al. NATURE IMMUNOLOGY
- The assembly of a spliceosomal small nuclear ribonucleoprotein particle
- (2008) S. B. Patel et al. NUCLEIC ACIDS RESEARCH
- De Novo Formation of a Subnuclear Body
- (2008) T. E. Kaiser et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started