Putative Mitochondrial Sex Determination in the Bivalvia: Insights From a Hybrid Transcriptome Assembly in Freshwater Mussels

Deciphering the Link between Doubly Uniparental Inheritance of mtDNA and Sex Determination in Bivalves: Clues from Comparative Transcriptomics

(2018) Charlotte Capt et al.   Genome Biology and Evolution

Genome Survey of the Freshwater Mussel Venustaconcha ellipsiformis (Bivalvia: Unionida) Using a Hybrid De Novo Assembly Approach

(2018) Sébastien Renaut et al.   Genome Biology and Evolution

Lose it or keep it: (how bivalves can provide) insights into mitochondrial inheritance mechanisms

(2018) Elisabetta Punzi et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Proteome and Transcriptome Analysis of Ovary, Intersex Gonads, and Testis Reveals Potential Key Sex Reversal/Differentiation Genes and Mechanism in Scallop Chlamys nobilis

(2018) Yu Shi et al.   MARINE BIOTECHNOLOGY

Multiple ways to prevent transmission of paternal mitochondrial DNA for maternal inheritance in animals

(2017) Ken Sato et al.   JOURNAL OF BIOCHEMISTRY

The protein pheromone temptin is an attractant of the gastropod Biomphalaria glabrata

(2017) Emmanuel A. Pila et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY A-NEUROETHOLOGY SENSORY NEURAL AND BEHAVIORAL PHYSIOLOGY

Mitochondrial Nucleoid: Shield and Switch of the Mitochondrial Genome

(2017) Sung Ryul Lee et al.   Oxidative Medicine and Cellular Longevity

The extremely divergent maternally- and paternally-transmitted mitochondrial genomes are co-expressed in somatic tissues of two freshwater mussel species with doubly uniparental inheritance of mtDNA

(2017) Sophie Breton et al.   PLoS One

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei

(2017) Marcela Uliano-Silva et al.   GigaScience

Evolution of sex-dependent mtDNA transmission in freshwater mussels (Bivalvia: Unionida)

(2017) Davide Guerra et al.   Scientific Reports

In silico analyses of mitochondrial ORFans in freshwater mussels (Bivalvia: Unionoida) provide a framework for future studies of their origin and function

(2016) Alyssa Mitchell et al.   BMC GENOMICS

Mitochondrial selfish elements and the evolution of biological novelties

(2016) Liliana Milani et al.   Current Zoology

Transcriptome Sequencing and Comparative Analysis of Ovary and Testis Identifies Potential Key Sex-Related Genes and Pathways in Scallop Patinopecten yessoensis

(2016) Yangping Li et al.   MARINE BIOTECHNOLOGY

Characterization of the mantle transcriptome in bivalves: Pecten maximus, Mytilus edulis and Crassostrea gigas

(2016) Tejaswi Yarra et al.   Marine Genomics

The rise of mitochondria in medicine

(2016) Martin Picard et al.   MITOCHONDRION

Transcriptome analysis of the freshwater pearl mussel (Cristaria plicata) mantle unravels genes involved in the formation of shell and pearl

(2016) Xuefeng Wang et al.   MOLECULAR GENETICS AND GENOMICS

Genetics: Mitochondrial DNA in evolution and disease

(2016) Douglas C. Wallace   NATURE

Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery

(2016) Bharat Bhusan Patnaik et al.   PLoS One

Head Transcriptomes of Two Closely Related Species of Fruit Flies of the Anastrepha fraterculus Group Reveals Divergent Genes in Species with Extensive Gene Flow

(2016) V. B. Rezende et al.   G3-Genes Genomes Genetics

Mitochondrial selfish elements and the evolution of biological novelties

(2016) Liliana Milani et al.   Current Zoology

Pursuing the quest for better understanding the taxonomic distribution of the system of doubly uniparental inheritance of mtDNA

(2016) Arthur Gusman et al.   PeerJ

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

De novotranscriptome sequencing to identify the sex-determination genes inHyriopsis schlegelii

(2015) Jianwu Shi et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Atypical mitochondrial inheritance patterns in eukaryotes

(2015) Sophie Breton et al.   GENOME

The PINK1-PARKIN Mitochondrial Ubiquitylation Pathway Drives a Program of OPTN/NDP52 Recruitment and TBK1 Activation to Promote Mitophagy

(2015) Jin-Mi Heo et al.   MOLECULAR CELL

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish

(2015) Hui Liu et al.   Biology of Sex Differences

Dna Methyltransferase 1 Mutations and Mitochondrial Pathology: Is Mtdna Methylated?

(2015) Alessandra Maresca   Frontiers in Genetics

Transcriptomics Analysis of Crassostrea hongkongensis for the Discovery of Reproduction-Related Genes

(2015) Ying Tong et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data

(2014) Zong Hong Zhang et al.   PLoS One

Microtubules and spermatogenesis

(2014) Liza O’Donnell et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

A resourceful genome: updating the functional repertoire and evolutionary role of animal mitochondrial DNAs

(2014) Sophie Breton et al.   TRENDS IN GENETICS

Genomic Analysis of the Pacific Oyster ( Crassostrea gigas ) Reveals Possible Conservation of Vertebrate Sex Determination in a Mollusc

(2014) Na Zhang et al.   G3-Genes Genomes Genetics

A comparison of methods for differential expression analysis of RNA-seq data

(2013) Charlotte Soneson et al.   BMC BIOINFORMATICS

A Comparative Analysis of Mitochondrial ORFans: New Clues on Their Origin and Role in Species with Doubly Uniparental Inheritance of Mitochondria

(2013) Liliana Milani et al.   Genome Biology and Evolution

Nuclear genes with sex bias inRuditapes philippinarum(Bivalvia, veneridae): Mitochondrial inheritance and sex determination in DUI species

(2013) Liliana Milani et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Mitochondrial association, protein phosphorylation, and degradation regulate the availability of the active Rab GTPase Ypt11 for mitochondrial inheritance

(2013) Agnieszka Lewandowska et al.   MOLECULAR BIOLOGY OF THE CELL

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Eliminating Mitochondrial DNA from Sperm

(2012) David C. Chan et al.   DEVELOPMENTAL CELL

Barriers to Male Transmission of Mitochondrial DNA in Sperm Development

(2012) Steven Z. DeLuca et al.   DEVELOPMENTAL CELL

Biparental Inheritance Through Uniparental Transmission: The Doubly Uniparental Inheritance (DUI) of Mitochondrial DNA

(2012) Eleftherios Zouros   Evolutionary Biology

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Dmrt genes in the development and evolution of sexual dimorphism

(2012) Artyom Kopp   TRENDS IN GENETICS

An Essential Role for Katanin p80 and Microtubule Severing in Male Gamete Production

(2012) Liza O'Donnell et al.   PLoS Genetics

De Novo Assembly of the Manila Clam Ruditapes philippinarum Transcriptome Provides New Insights into Expression Bias, Mitochondrial Doubly Uniparental Inheritance and Sex Determination

(2011) F. Ghiselli et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA

(2010) Hélène Doucet-Beaupré et al.   BMC EVOLUTIONARY BIOLOGY

Uniparental inheritance of cpDNA and the genetic control of sexual differentiation in Chlamydomonas reinhardtii

(2010) Yoshiki Nishimura   JOURNAL OF PLANT RESEARCH

Novel Protein Genes in Animal mtDNA: A New Sex Determination System in Freshwater Mussels (Bivalvia: Unionoida)?

(2010) Sophie Breton et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strict Sex-Specific mtDNA Segregation in the Germ line of the DUI Species Venerupis philippinarum (Bivalvia: Veneridae)

(2010) F. Ghiselli et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Doubly Uniparental Inheritance: Two Mitochondrial Genomes, One Precious Model for Organelle DNA Inheritance and Evolution

(2009) Marco Passamonti et al.   DNA AND CELL BIOLOGY

Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication

(2009) Sophie Breton et al.   GENETICS

Sex determination in mammals — Before and after the evolution of SRY

(2008) M. C. Wallis et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

EXOG, a novel paralog of Endonuclease G in higher eukaryotes

(2008) Iwona A. Cymerman et al.   NUCLEIC ACIDS RESEARCH