A Comparative Analysis of Mitochondrial ORFans: New Clues on Their Origin and Role in Species with Doubly Uniparental Inheritance of Mitochondria

Structure, Transcription, and Variability of Metazoan Mitochondrial Genome: Perspectives from an Unusual Mitochondrial Inheritance System

(2013) Fabrizio Ghiselli et al.   Genome Biology and Evolution

Dynamic Evolution of Endogenous Retrovirus-Derived Genes Expressed in Bovine Conceptuses during the Period of Placentation

(2013) So Nakagawa et al.   Genome Biology and Evolution

Biparental Inheritance Through Uniparental Transmission: The Doubly Uniparental Inheritance (DUI) of Mitochondrial DNA

(2012) Eleftherios Zouros   Evolutionary Biology

New features of Asian Crassostrea oyster mitochondrial genomes: A novel alloacceptor tRNA gene recruitment and two novel ORFs

(2012) Xiangyun Wu et al.   GENE

Population Diversity of ORFan Genes in Escherichia coli

(2012) Guoqin Yu et al.   Genome Biology and Evolution

A second, cryptic species of the soft coral genus Incrustatus (Anthozoa: Octocorallia: Clavulariidae) from Tierra del Fuego, Argentina, revealed by DNA barcoding

(2012) Catherine S. McFadden et al.   HELGOLAND MARINE RESEARCH

A Conserved Lipid-binding Loop in the Kindlin FERM F1 Domain Is Required for Kindlin-mediated αIIbβ3 Integrin Coactivation

(2012) Mohamed Bouaouina et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sex-Linked Mitochondrial Behavior During Early Embryo Development in Ruditapes philippinarum (Bivalvia Veneridae) a Species with the Doubly Uniparental Inheritance (DUI) of Mitochondria

(2012) LILIANA MILANI et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

(2011) Jaret P Bilewitch et al.   BMC EVOLUTIONARY BIOLOGY

Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae)

(2011) Marco Passamonti et al.   BMC GENOMICS

First Complete Mitochondrial Genome Sequence from a Box Jellyfish Reveals a Highly Fragmented Linear Architecture and Insights into Telomere Evolution

(2011) David Roy Smith et al.   Genome Biology and Evolution

Evolution of Linear Mitochondrial Genomes in Medusozoan Cnidarians

(2011) Ehsan Kayal et al.   Genome Biology and Evolution

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Evidence for a Fourteenth mtDNA-Encoded Protein in the Female-Transmitted mtDNA of Marine Mussels (Bivalvia: Mytilidae)

(2011) Sophie Breton et al.   PLoS One

Doubly Uniparental Inheritance of Mitochondria As a Model System for Studying Germ Line Formation

(2011) Liliana Milani et al.   PLoS One

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Relaxed Purifying Selection and Possibly High Rate of Adaptation in Primate Lineage-Specific Genes

(2010) James J. Cai et al.   Genome Biology and Evolution

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

Molecular Phylogenetic Insights into the Evolution of Octocorallia: A Review

(2010) C. S. McFadden et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Mitochondria and viruses

(2010) Akane Ohta et al.   MITOCHONDRION

Novel Protein Genes in Animal mtDNA: A New Sex Determination System in Freshwater Mussels (Bivalvia: Unionoida)?

(2010) Sophie Breton et al.   MOLECULAR BIOLOGY AND EVOLUTION

Endogenous retroviral LTRs as promoters for human genes: A critical assessment

(2009) Carla J. Cohen et al.   GENE

Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication

(2009) Sophie Breton et al.   GENETICS

Mimivirus and Mimiviridae: Giant viruses with an increasing number of potential hosts, including corals and sponges

(2009) Jean-Michel Claverie et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

@TOME-2: a new pipeline for comparative modeling of protein-ligand complexes

(2009) J.-L. Pons et al.   NUCLEIC ACIDS RESEARCH

TOPCONS: consensus prediction of membrane protein topology

(2009) A. Bernsel et al.   NUCLEIC ACIDS RESEARCH

Expression of sunflower cytoplasmic male sterility-associated open reading frame, orfH522 induces male sterility in transgenic tobacco plants

(2009) Narasimha Rao Nizampatnam et al.   PLANTA

Molecular mechanisms involved in inflammasome activation

(2009) Clare Bryant et al.   TRENDS IN CELL BIOLOGY

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY

Innate immunity to virus infection

(2008) Osamu Takeuchi et al.   IMMUNOLOGICAL REVIEWS

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

Coordination of gene expression between organellar and nuclear genomes

(2008) Jesse D. Woodson et al.   NATURE REVIEWS GENETICS

Genome Barriers between Nuclei and Mitochondria Exemplified by Cytoplasmic Male Sterility

(2008) S. Fujii et al.   PLANT AND CELL PHYSIOLOGY

Modulation of microtubule assembly by the HIV-1 Tat protein is strongly dependent on zinc binding to Tat

(2008) Caroline Egelé et al.   Retrovirology

Study of Diseases and the Immune System of Bivalves Using Molecular Biology and Genomics

(2008) Camino Gestal et al.   REVIEWS IN FISHERIES SCIENCE

Viral Control of Mitochondrial Apoptosis

(2008) Lorenzo Galluzzi et al.   PLoS Pathogens