A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells

A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells

(2019) Lei Wang et al.   GigaScience

Changes in redox regulation during transition from C 3 to single cell C 4 photosynthesis in Bienertia sinuspersici

(2018) Baris Uzilday et al.   JOURNAL OF PLANT PHYSIOLOGY

Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates

(2018) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of Chenopodium quinoa

(2017) David E. Jarvis et al.   NATURE

The Apostasia genome and the evolution of orchids

(2017) Guo-Qiang Zhang et al.   NATURE

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Transit peptide elements mediate selective protein targeting to two different types of chloroplasts in the single-cell C4 species Bienertia sinuspersici

(2017) Diana Wimmer et al.   Scientific Reports

Germination of dimorphic seeds of Suaeda aralocaspica in response to light and salinity conditions during and after cold stratification

(2017) Hong-Ling Wang et al.   PeerJ

The Costs of Photorespiration to Food Production Now and in the Future

(2016) Berkley J. Walker et al.   Annual Review of Plant Biology

The unique structural and biochemical development of single cell C4photosynthesis along longitudinal leaf gradients inBienertia sinuspersiciandSuaeda aralocaspica(Chenopodiaceae)

(2016) Nuria K. Koteyeva et al.   JOURNAL OF EXPERIMENTAL BOTANY

Size matters for single-cell C4photosynthesis inBienertia

(2016) Ivan Jurić et al.   JOURNAL OF EXPERIMENTAL BOTANY

Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement

(2016) Marco Betti et al.   JOURNAL OF EXPERIMENTAL BOTANY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Developmental and Subcellular Organization of Single-Cell C4 Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing

(2015) Sascha Offermann et al.   JOURNAL OF PROTEOME RESEARCH

Effects of salinity on the growth, physiology and relevant gene expression of an annual halophyte grown from heteromorphic seeds

(2015) Jing Cao et al.   AoB Plants

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Exploring mechanisms linked to differentiation and function of dimorphic chloroplasts in the single cell C4 species Bienertia sinuspersici

(2014) Josh Rosnow et al.   BMC PLANT BIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single-cell C4photosynthesis: efficiency and acclimation ofBienertia sinuspersicito growth under low light

(2014) Samantha S. Stutz et al.   NEW PHYTOLOGIST

Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis

(2014) Linhai Wang et al.   GENOME BIOLOGY

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

One decade after the discovery of single-cell C4 species in terrestrial plants: what did we learn about the minimal requirements of C4 photosynthesis?

(2013) Richard M. Sharpe et al.   PHOTOSYNTHESIS RESEARCH

Temperature response of photosynthesis in C3, C4, and CAM plants: temperature acclimation and temperature adaptation

(2013) Wataru Yamori et al.   PHOTOSYNTHESIS RESEARCH

Seed dimorphism, nutrients and salinity differentially affect seed traits of the desert halophyte Suaeda aralocaspica via multiple maternal effects

(2012) Lei Wang et al.   BMC PLANT BIOLOGY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Development of C4 Rice: Current Progress and Future Challenges

(2012) S. von Caemmerer et al.   SCIENCE

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

(2011) Massimo Iorizzo et al.   BMC GENOMICS

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Resolving the Compartmentation and Function of C4 Photosynthesis in the Single-Cell C4 Species Bienertia sinuspersici

(2011) S. Offermann et al.   PLANT PHYSIOLOGY

The effects of salinity on photosynthesis and growth of the single-cell C4 species Bienertia sinuspersici (Chenopodiaceae)

(2010) Courtney P. Leisner et al.   PHOTOSYNTHESIS RESEARCH

Protoplast isolation and transient gene expression in the single-cell C4 species, Bienertia sinuspersici

(2010) Shiu-Cheung Lung et al.   PLANT CELL REPORTS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Germination of Dimorphic Seeds of the Desert Annual Halophyte Suaeda aralocaspica (Chenopodiaceae), a C4 Plant without Kranz Anatomy

(2008) Lei Wang et al.   ANNALS OF BOTANY

Using C4 photosynthesis to increase the yield of rice—rationale and feasibility

(2008) Julian M Hibberd et al.   CURRENT OPINION IN PLANT BIOLOGY

Leaf Development in the Single-Cell C4 System in Bienertia sinuspersici: Expression of Genes and Peptide Levels for C4 Metabolism in Relation to Chlorenchyma Structure under Different Light Conditions

(2008) M. V. Lara et al.   PLANT PHYSIOLOGY

Structural changes in the vacuole and cytoskeleton are key to development of the two cytoplasmic domains supporting single-cell C4 photosynthesis in Bienertia sinuspersici

(2008) Joonho Park et al.   PLANTA