Origin and Evolution of Deleterious Mutations in Horses

ngsLD: evaluating linkage disequilibrium using genotype likelihoods

(2019) Emma A Fox et al.   BIOINFORMATICS

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

(2019) Antoine Fages et al.   CELL

The horse Y chromosome as an informative marker for tracing sire lines

(2019) Sabine Felkel et al.   Scientific Reports

The Genomic Makeup of Nine Horse Populations Sampled in the Netherlands

(2019) Schurink et al.   Genes

A re-evaluation of the domestication bottleneck from archaeogenomic evidence

(2018) Robin G Allaby et al.   Evolutionary Applications

Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

(2018) Charleen Gaunitz et al.   SCIENCE

Founder-specific inbreeding depression affects racing performance in Thoroughbred horses

(2018) Evelyn T. Todd et al.   Scientific Reports

Deleterious alleles in the context of domestication, inbreeding, and selection

(2018) Mirte Bosse et al.   Evolutionary Applications

Mutational load, inbreeding depression and heterosis in subdivided populations

(2018) Brian Charlesworth   MOLECULAR ECOLOGY

Genetic Costs of Domestication and Improvement

(2017) Brook T Moyers et al.   JOURNAL OF HEREDITY

Evidence for the Selective Basis of Transition-to-Transversion Substitution Bias in Two RNA Viruses

(2017) Daniel M Lyons et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient genomic changes associated with domestication of the horse

(2017) Pablo Librado et al.   SCIENCE

Estimating IBD tracts from low coverage NGS data

(2016) Filipe G. Vieira et al.   BIOINFORMATICS

The Evolutionary Origin and Genetic Makeup of Domestic Horses

(2016) P. Librado et al.   GENETICS

Inbreeding load and purging: implications for the short-term survival and the conservation management of small populations

(2016) A Caballero et al.   HEREDITY

Understanding Inbreeding Depression, Purging, and Genetic Rescue

(2016) Philip W. Hedrick et al.   TRENDS IN ECOLOGY & EVOLUTION

A nonsense mutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses

(2015) Bart J. Ducro et al.   BMC GENOMICS

Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse

(2015) Clio Der Sarkissian et al.   CURRENT BIOLOGY

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.

(2015) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

(2015) Clare D. Marsden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

(2015) Pablo Librado et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

(2014) Mikkel Schubert et al.   Nature Protocols

Congenital Hepatic Fibrosis in the Franches-Montagnes Horse Is Associated with the Polycystic Kidney and Hepatic Disease 1 (PKHD1) Gene

(2014) Michaela Drögemüller et al.   PLoS One

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

(2014) Mikkel Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long Runs of Homozygosity Are Enriched for Deleterious Variation

(2013) Zachary A. Szpiech et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Identification of Genetic Variation on the Horse Y Chromosome and the Tracing of Male Founder Lineages in Modern Breeds

(2013) Barbara Wallner et al.   PLoS One

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

(2013) D. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA Damage

(2013) J. Dabney et al.   Cold Spring Harbor Perspectives in Biology

Understanding and Predicting the Fitness Decline of Shrunk Populations: Inbreeding, Purging, Mutation, and Standard Selection

(2012) A. Garcia-Dorado   GENETICS

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication

(2012) A. Achilli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping of equine cerebellar abiotrophy to ECA2 and identification of a potential causative mutation affecting expression of MUTYH

(2010) Leah S. Brault et al.   GENOMICS

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Coat Color Variation at the Beginning of Horse Domestication

(2009) A. Ludwig et al.   SCIENCE

The Earliest Horse Harnessing and Milking

(2009) A. K. Outram et al.   SCIENCE

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE

Graph Clustering Via a Discrete Uncoupling Process

(2008) Stijn Van Dongen   SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS