Estimating IBD tracts from low coverage NGS data

The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication

(2016) Hongru Wang et al.   Molecular Plant

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

Accounting for uncertainty in DNA sequencing data

(2015) Jason A. O’Rawe et al.   TRENDS IN GENETICS

High level of inbreeding in final phase of 1000 Genomes Project

(2015) Steven Gazal et al.   Scientific Reports

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

(2013) Filipe G. Vieira et al.   GENOME RESEARCH

Characterizing and measuring bias in sequence data

(2013) Michael G Ross et al.   GENOME BIOLOGY

Estimation of the outcrossing rate for annual Asian wild rice under field conditions

(2012) Phuong Dang Thai Phan et al.   BREEDING SCIENCE

Maximum likelihood estimation of individual inbreeding coefficients and null allele frequencies

(2012) NATHAN HALL et al.   Genetics Research

Domestication and geographic origin ofOryza sativain China: insights from multilocus analysis of nucleotide variation ofO. sativaandO. rufipogon

(2012) Xin Wei et al.   MOLECULAR ECOLOGY

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

Unexpected Relationships and Inbreeding in HapMap Phase III Populations

(2012) Eric L. Stevens et al.   PLoS One

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies

(2010) E. R. Martin et al.   BIOINFORMATICS

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

GENETIC ARCHITECTURE FOR THE ADAPTIVE ORIGIN OF ANNUAL WILD RICE,ORYZA NIVARA

(2009) Michael A. Grillo et al.   EVOLUTION

Linkage Disequilibrium and Demographic History of Wild and Domestic Canids

(2009) M. M. Gray et al.   GENETICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH