Identification of Genetic Variation on the Horse Y Chromosome and the Tracing of Male Founder Lineages in Modern Breeds

Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

(2012) J. A. Lenstra et al.   ANIMAL GENETICS

TRUTH IN THE BONES: RESOLVING THE IDENTITY OF THE FOUNDING ELITE THOROUGHBRED RACEHORSES

(2012) M. A. BOWER et al.   ARCHAEOMETRY

Reconstructing the origin and spread of horse domestication in the Eurasian steppe

(2012) V. Warmuth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication

(2012) A. Achilli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies

(2012) Molly E. McCue et al.   PLoS Genetics

Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication

(2011) Sebastian Lippold et al.   BMC EVOLUTIONARY BIOLOGY

Origins of domestic dog in Southern East Asia is supported by analysis of Y-chromosome DNA

(2011) Z-L Ding et al.   HEREDITY

Variation in genome-wide mutation rates within and between human families

(2011) Donald F Conrad et al.   NATURE GENETICS

Sex-chromosome evolution: recent progress and the influence of male and female heterogamety

(2011) Hans Ellegren   NATURE REVIEWS GENETICS

Dual Origins of Dairy Cattle Farming – Evidence from a Comprehensive Survey of European Y-Chromosomal Variation

(2011) Ceiridwen J. Edwards et al.   PLoS One

A Gene Catalogue of the Euchromatic Male-Specific Region of the Horse Y Chromosome: Comparison with Human and Other Mammals

(2011) Nandina Paria et al.   PLoS One

Phylogenetic Distinctiveness of Middle Eastern and Southeast Asian Village Dog Y Chromosomes Illuminates Dog Origins

(2011) Sarah K. Brown et al.   PLoS One

Discovery of lost diversity of paternal horse lineages using ancient DNA

(2011) Sebastian Lippold et al.   Nature Communications

Analysis of the non-recombining Y chromosome defines polymorphisms in domestic pig breeds: ancestral bases identified by comparative sequencing

(2010) K. M. Cliffe et al.   ANIMAL GENETICS

The cosmopolitan maternal heritage of the Thoroughbred racehorse breed shows a significant contribution from British and Irish native mares

(2010) M. A. Bower et al.   Biology Letters

Frequent gene conversion events between the X and Y homologous chromosomal regions in primates

(2010) Mineyo Iwase et al.   BMC EVOLUTIONARY BIOLOGY

Identification of Y Chromosome Genetic Variations in Chinese Indigenous Horse Breeds

(2010) Yinghui Ling et al.   JOURNAL OF HEREDITY

Characterization of duplicate gene evolution in the recent natural allopolyploidTragopogon miscellusby next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

(2010) RICHARD J. A. BUGGS et al.   MOLECULAR ECOLOGY

Origin and History of Mitochondrial DNA Lineages in Domestic Horses

(2010) Michael Cieslak et al.   PLoS One

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

(2010) J. C. Roach et al.   SCIENCE

Gene Conversion between the X Chromosome and the Male-Specific Region of the Y Chromosome at a Translocation Hotspot

(2009) Zoë H. Rosser et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree

(2009) Yali Xue et al.   CURRENT BIOLOGY

Deep sequencing to reveal new variants in pooled DNA samples

(2009) Astrid A. Out et al.   HUMAN MUTATION

Footprints of X-to-Y Gene Conversion in Recent Human Evolution

(2009) B. Trombetta et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrating Y-Chromosome, Mitochondrial, and Autosomal Data to Analyze the Origin of Pig Breeds

(2009) O. Ramirez et al.   MOLECULAR BIOLOGY AND EVOLUTION

What's in a name? Y chromosomes, surnames and the genetic genealogy revolution

(2009) Turi E. King et al.   TRENDS IN GENETICS

Genetic variability in Hanoverian warmblood horses using pedigree analysis1

(2008) H. Hamann et al.   JOURNAL OF ANIMAL SCIENCE

A large genome center's improvements to the Illumina sequencing system

(2008) Michael A Quail et al.   NATURE METHODS