Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks
出版年份 2019 全文链接
标题
Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks
作者
关键词
-
出版物
GENOME RESEARCH
Volume 29, Issue 10, Pages 1733-1743
出版商
Cold Spring Harbor Laboratory
发表日期
2019-09-19
DOI
10.1101/gr.248658.119
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The chromatin accessibility landscape of primary human cancers
- (2018) M. Ryan Corces et al. SCIENCE
- TMPRSS2–ERG fusion co-opts master transcription factors and activates NOTCH signaling in primary prostate cancer
- (2017) Ken J Kron et al. NATURE GENETICS
- Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
- (2017) Valentina Boeva et al. NATURE GENETICS
- Signal-Dependent Recruitment of BRD4 to Cardiomyocyte Super-Enhancers Is Suppressed by a MicroRNA
- (2016) Matthew S. Stratton et al. Cell Reports
- PharmacoGx: an R package for analysis of large pharmacogenomic datasets
- (2015) Petr Smirnov et al. BIOINFORMATICS
- Transcription factor networks in B-cell differentiation link development to acute lymphoid leukemia
- (2015) R. Somasundaram et al. BLOOD
- Super-enhancers delineate disease-associated regulatory nodes in T cells
- (2015) Golnaz Vahedi et al. NATURE
- Identification and characterization of essential genes in the human genome
- (2015) T. Wang et al. SCIENCE
- Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization
- (2015) Vuthy Ea et al. Genes
- The Molecular Signatures Database Hallmark Gene Set Collection
- (2015) Arthur Liberzon et al. Cell Systems
- ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters
- (2015) Swneke D. Bailey et al. Nature Communications
- CDK7 Inhibition Suppresses Super-Enhancer-Linked Oncogenic Transcription in MYCN-Driven Cancer
- (2014) Edmond Chipumuro et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Genome-wide map of regulatory interactions in the human genome
- (2014) Nastaran Heidari et al. GENOME RESEARCH
- Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
- (2014) Paul A. Northcott et al. NATURE
- Defining functional DNA elements in the human genome
- (2014) M. Kellis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
- (2013) Jakob Lovén et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- GABP transcription factor is required for development of chronic myelogenous leukemia via its control of PRKD2
- (2013) Z.-F. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- (2011) L. Song et al. GENOME RESEARCH
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
- (2010) V. Gotea et al. GENOME RESEARCH
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- A map of open chromatin in human pancreatic islets
- (2010) Kyle J Gaulton et al. NATURE GENETICS
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription
- (2008) Mathieu Lupien et al. CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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