Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

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Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

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Towards the human intestinal microbiota phylogenetic core

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

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Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

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Global ecological patterns in uncultured Archaea

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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

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Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz

(2009) Brandon F. Keele et al.   NATURE

Accurate determination of microbial diversity from 454 pyrosequencing data

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A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

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The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Mammals and Their Gut Microbes

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The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics

Molecular Ecology and Natural History of Simian Foamy Virus Infection in Wild-Living Chimpanzees

(2008) Weimin Liu et al.   PLoS Pathogens