Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti
出版年份 2019 全文链接
标题
Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti
作者
关键词
Pathogenesis, Comparative genomics, Genome evolution, Genome analysis, Fungal genomics, Evolutionary genetics, Fungal evolution, Proteases
出版物
PLoS One
Volume 14, Issue 5, Pages e0212248
出版商
Public Library of Science (PLoS)
发表日期
2019-06-01
DOI
10.1371/journal.pone.0212248
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Plant–Pathogen Warfare under Changing Climate Conditions
- (2018) André C. Velásquez et al. CURRENT BIOLOGY
- Whole-Genome Sequence of the Orchid Anthracnose Pathogen Colletotrichum orchidophilum
- (2018) Riccardo Baroncelli et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Chili anthracnose: Colletotrichum taxonomy and pathogenicity
- (2018) O. Mongkolporn et al. PLANT PATHOLOGY
- Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses
- (2018) Xiaofei Liang et al. PLoS One
- MUMmer4: A fast and versatile genome alignment system
- (2018) Guillaume Marçais et al. PLoS Computational Biology
- The Colletotrichum dracaenophilum, C. magnum and C. orchidearum species complexes
- (2018) U. Damm et al. STUDIES IN MYCOLOGY
- Genera of phytopathogenic fungi: GOPHY 2
- (2018) Y. Marin-Felix et al. STUDIES IN MYCOLOGY
- The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
- (2017) Neil D Rawlings et al. NUCLEIC ACIDS RESEARCH
- Transposable Elements Direct The Coevolution between Plants and Microbes
- (2017) Michael F. Seidl et al. TRENDS IN GENETICS
- Life styles of Colletotrichum species and implications for plant biosecurity
- (2017) Dilani D. De Silva et al. Fungal Biology Reviews
- A plant pathology perspective of fungal genome sequencing
- (2017) Janneke Aylward et al. IMA Fungus
- Genome sequencing and comparative genomics reveal a repertoire of putative pathogenicity genes in chilli anthracnose fungus Colletotrichum truncatum
- (2017) Soumya Rao et al. PLoS One
- Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum
- (2016) Riccardo Baroncelli et al. BMC GENOMICS
- OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes
- (2016) Alison C. Testa et al. Genome Biology and Evolution
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- A Fungal Effector With Host Nuclear Localization and DNA-Binding Properties Is Required for Maize Anthracnose Development
- (2016) Walter A. Vargas et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database
- (2016) Martin Urban et al. NUCLEIC ACIDS RESEARCH
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- The frequency of sex in fungi
- (2016) Bart P. S. Nieuwenhuis et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
- (2016) Stéphane Hacquard et al. Nature Communications
- Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
- (2016) Raúl Castanera et al. PLoS Genetics
- Elucidating the Role of Effectors in Plant-Fungal Interactions: Progress and Challenges
- (2016) Carrie Selin et al. Frontiers in Microbiology
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- The two-speed genomes of filamentous pathogens: waltz with plants
- (2015) Suomeng Dong et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Characterization of the Carbohydrate Binding Module 18 gene family in the amphibian pathogen Batrachochytrium dendrobatidis
- (2015) Peng Liu et al. FUNGAL GENETICS AND BIOLOGY
- Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEXTM-pre-treated biomass
- (2015) Sivakumar Pattathil et al. JOURNAL OF EXPERIMENTAL BOTANY
- Evolution of virulence in fungal plant pathogens: exploiting fungal genomics to control plant disease
- (2015) Barbara J. Howlett et al. MYCOLOGIA
- Effector P: predicting fungal effector proteins from secretomes using machine learning
- (2015) Jana Sperschneider et al. NEW PHYTOLOGIST
- The Transporter Classification Database (TCDB): recent advances
- (2015) Milton H. Saier et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
- (2015) Tilmann Weber et al. NUCLEIC ACIDS RESEARCH
- ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
- (2015) Tauno Metsalu et al. NUCLEIC ACIDS RESEARCH
- Changes in Distribution and Frequency of Fungi Associated With a Foliar Disease Complex of Pyrethrum in Australia
- (2015) Frank S. Hay et al. PLANT DISEASE
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus
- (2014) Mateus F Santana et al. BMC GENOMICS
- Estimating the Phanerozoic history of the Ascomycota lineages: Combining fossil and molecular data
- (2014) Christina Beimforde et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Colletotrichum destructivum species complex – hemibiotrophic pathogens of forage and field crops
- (2014) U. Damm et al. STUDIES IN MYCOLOGY
- Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi
- (2013) Zhongtao Zhao et al. BMC GENOMICS
- Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
- (2013) Mira V. Han et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Global Aspects of pacC Regulation of Pathogenicity Genes in Colletotrichum gloeosporioides as Revealed by Transcriptome Analysis
- (2013) Noam Alkan et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens
- (2013) Eva Holtgrewe Stukenbrock NEW PHYTOLOGIST
- A new anthracnose disease of pyrethrum caused byColletotrichum tanacetisp. nov
- (2013) M. Barimani et al. PLANT PATHOLOGY
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Fungal cytochrome P450 sterol 14α-demethylase (CYP51) and azole resistance in plant and human pathogens
- (2012) Rayko Becher et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Genome Update of Botrytis cinerea Strains B05.10 and T4
- (2012) Martijn Staats et al. EUKARYOTIC CELL
- The Top 10 fungal pathogens in molecular plant pathology
- (2012) RALPH DEAN et al. MOLECULAR PLANT PATHOLOGY
- Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
- (2012) Richard J O'Connell et al. NATURE GENETICS
- Genome evolution in filamentous plant pathogens: why bigger can be better
- (2012) Sylvain Raffaele et al. NATURE REVIEWS MICROBIOLOGY
- Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift ofColletotrichumfungi
- (2012) Pamela Gan et al. NEW PHYTOLOGIST
- dbCAN: a web resource for automated carbohydrate-active enzyme annotation
- (2012) Yanbin Yin et al. NUCLEIC ACIDS RESEARCH
- Colletotrichum – current status and future directions
- (2012) P.F. Cannon et al. STUDIES IN MYCOLOGY
- Large-Scale Gene Disruption in Magnaporthe oryzae Identifies MC69, a Secreted Protein Required for Infection by Monocot and Dicot Fungal Pathogens
- (2012) Hiromasa Saitoh et al. PLoS Pathogens
- Hydrophobins—Unique Fungal Proteins
- (2012) Jagadeesh Bayry et al. PLoS Pathogens
- Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum
- (2012) Jochen Kleemann et al. PLoS Pathogens
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Genetic transformation of Colletotrichum truncatum associated with anthracnose disease of chili by random insertional mutagenesis
- (2011) Adelene Shu Mei Auyong et al. JOURNAL OF BASIC MICROBIOLOGY
- RNA-mediated gene silencing of ToxB in Pyrenophora tritici-repentis
- (2011) REEM ABOUKHADDOUR et al. MOLECULAR PLANT PATHOLOGY
- SyMAP v3.4: a turnkey synteny system with application to plant genomes
- (2011) Carol Soderlund et al. NUCLEIC ACIDS RESEARCH
- Dynamics of gene duplication and transposons in microbial genomes following a sudden environmental change
- (2011) Nicholas Chia et al. PHYSICAL REVIEW E
- Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
- (2011) Thierry Rouxel et al. Nature Communications
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
- SMURF: Genomic mapping of fungal secondary metabolite clusters
- (2010) Nora Khaldi et al. FUNGAL GENETICS AND BIOLOGY
- A YeastSTE11HomologueCoMEKK1Is Essential for Pathogenesis-Related Morphogenesis inColletotrichum orbiculare
- (2010) Ayumu Sakaguchi et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
- (2010) Li-Jun Ma et al. NATURE
- De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis
- (2010) Minou Nowrousian et al. PLoS Genetics
- Natural Toxins for Use in Pest Management
- (2010) Stephen O. Duke et al. Toxins
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
- (2009) Alex N Nguyen Ba et al. BMC BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
- (2008) James K Hane et al. BMC BIOINFORMATICS
- PredGPI: a GPI-anchor predictor
- (2008) Andrea Pierleoni et al. BMC BIOINFORMATICS
- Fungal cytochrome P450 database
- (2008) Jongsun Park et al. BMC GENOMICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- The evolution of transposon repeat-induced point mutation in the genome of Colletotrichum cereale: Reconciling sex, recombination and homoplasy in an ‘‘asexual” pathogen
- (2007) Jo Anne Crouch et al. FUNGAL GENETICS AND BIOLOGY
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