Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice

Single-Step Reaction Norm Models for Genomic Prediction in Multienvironment Recurrent Selection Trials

(2018) Odilon P. Morais Júnior et al.   CROP SCIENCE

Genomic Prediction Accounting for Genotype by Environment Interaction Offers an Effective Framework for Breeding Simultaneously for Adaptation to an Abiotic Stress and Performance Under Normal Cropping Conditions in Rice

(2018) Manel Ben Hassen et al.   G3-Genes Genomes Genetics

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Combining drought and submergence tolerance in rice: marker-assisted breeding and QTL combination effects

(2017) Shalabh Dixit et al.   MOLECULAR BREEDING

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel

(2017) M. Ben Hassen et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2017) Elliot L. Heffner et al.   Plant Genome

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Extending the Marker × Environment Interaction Model for Genomic-Enabled Prediction and Genome-Wide Association Analysis in Durum Wheat

(2016) José Crossa et al.   CROP SCIENCE

Predicting rice hybrid performance using univariate and multivariate GBLUP models based on North Carolina mating design II

(2016) X Wang et al.   HEREDITY

Breeding schemes for the implementation of genomic selection in wheat ( Triticum spp . )

(2016) Filippo M. Bassi et al.   PLANT SCIENCE

Genomic Prediction of Genotype × Environment Interaction Kernel Regression Models

(2016) Jaime Cuevas et al.   Plant Genome

A Unified and Comprehensible View of Parametric and Kernel Methods for Genomic Prediction with Application to Rice

(2016) Laval Jacquin et al.   Frontiers in Genetics

Updating the reference population to achieve constant genomic prediction reliability across generations

(2015) M. Pszczola et al.   Animal

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding

(2015) Cécile Grenier et al.   PLoS One

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Assessing Genomic Selection Prediction Accuracy in a Dynamic Barley Breeding Population

(2015) A. H. Sallam et al.   Plant Genome

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Breeding high-yielding drought-tolerant rice: genetic variations and conventional and molecular approaches

(2014) Arvind Kumar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Improving the Accuracy of Whole Genome Prediction for Complex Traits Using the Results of Genome Wide Association Studies

(2014) Zhe Zhang et al.   PLoS One

The impact of population structure on genomic prediction in stratified populations

(2014) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.)

(2014) Akio Onogi et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of Across-Environment Genome-Wide Prediction in Maize Nested Association Mapping Populations

(2013) Zhigang Guo et al.   G3-Genes Genomes Genetics

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Increased drought tolerance and wider adaptability of qDTY 12.1 conferred by its interaction with qDTY 2.3 and qDTY 3.2

(2012) Shalabh Dixit et al.   MOLECULAR BREEDING

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

(2012) Jessica Rutkoski et al.   Plant Genome

Genomic Prediction of Genetic Values for Resistance to Wheat Rusts

(2012) Leonardo Ornella et al.   Plant Genome

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Best Linear Unbiased Prediction of Genomic Breeding Values Using a Trait-Specific Marker-Derived Relationship Matrix

(2010) Zhe Zhang et al.   PLoS One

Linkage Disequilibrium Between Loci With Unknown Phase

(2009) A. R. Rogers et al.   GENETICS

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Genomic Selection Using Low-Density Marker Panels

(2009) D. Habier et al.   GENETICS

The Accuracy of Genomic Selection in Norwegian Red Cattle Assessed by Cross-Validation

(2009) T. Luan et al.   GENETICS

Breeding for drought tolerance: Direct selection for yield, response to selection and use of drought-tolerant donors in upland and lowland-adapted populations

(2008) Arvind Kumar et al.   FIELD CROPS RESEARCH

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

Breeding upland rice for drought resistance

(2008) Jérôme Bernier et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Breeding for abiotic stresses for sustainable agriculture

(2007) J.R Witcombe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES