Phosphorus Input Alters the Assembly of Rice (Oryza sativa L.) Root-Associated Communities

Rare taxa of alkaline phosphomonoesterase-harboring microorganisms mediate soil phosphorus mineralization

(2019) Xiaomeng Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Carbon input and allocation by rice into paddy soils: A review

(2019) Yalong Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contribution of dark septate fungi to the nutrient uptake and growth of rice plants

(2018) Carlos Vergara et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Characterization and in planta nitrogen fixation of plant growth promoting endophytic diazotrophic Lysinibacillus sphaericus isolated from rice ( Oryza sativa )

(2018) S. Shabanamol et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Phosphate levels influence the utilisation of rice rhizodeposition carbon and the phosphate-solubilising microbial community in a paddy soil

(2018) Xi-En Long et al.   SOIL BIOLOGY & BIOCHEMISTRY

Anaerobic methanotrophic communities thrive in deep submarine permafrost

(2018) Matthias Winkel et al.   Scientific Reports

Response of symbiotic and asymbiotic nitrogen-fixing microorganisms to nitrogen fertilizer application

(2018) Yaying Li et al.   JOURNAL OF SOILS AND SEDIMENTS

Functional Characterization of Endophytic Fungal Community Associated with Oryza sativa L. and Zea mays L.

(2017) Momota Potshangbam et al.   Frontiers in Microbiology

Start-up phase of an anaerobic full-scale farm reactor – Appearance of mesophilic anaerobic conditions and establishment of the methanogenic microbial community

(2016) Xavier Goux et al.   BIORESOURCE TECHNOLOGY

Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice ( Oryza sativa L.)

(2016) Wenfeng Wang et al.   MICROBIOLOGICAL RESEARCH

Impacts of nitrogen and phosphorus additions on the abundance and community structure of ammonia oxidizers and denitrifying bacteria in Chinese fir plantations

(2016) Yuqian Tang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Different Bacterial Populations Associated with the Roots and Rhizosphere of Rice Incorporate Plant-Derived Carbon

(2015) Marcela Hernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Atmospheric N deposition alters connectance, but not functional potential among saprotrophic bacterial communities

(2015) Zachary B. Freedman et al.   MOLECULAR ECOLOGY

Analysis of fungal endophytes associated with rice roots from irrigated and upland ecosystems in Kenya

(2015) Njira Njira Pili et al.   PLANT AND SOIL

Diversity and functional characterization of bacterial endophytes dwelling in various rice (Oryza sativa L.) tissues, and their seed-borne dissemination into rhizosphere under gnotobiotic P-stress

(2015) Asif Hameed et al.   PLANT AND SOIL

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1

(2015) Andrea Firrincieli et al.   Frontiers in Microbiology

Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees

(2015) Henry Müller et al.   Frontiers in Microbiology

Inside the root microbiome: Bacterial root endophytes and plant growth promotion

(2013) Jonathan R. Gaiero et al.   AMERICAN JOURNAL OF BOTANY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Long-Term Rice and Green Manure Rotation Alters the Endophytic Bacterial Communities of the Rice Root

(2013) Xiao-Xia Zhang et al.   MICROBIAL ECOLOGY

Root colonization and association of phosphate- solubilizing bacteria at various levels of triple supper phosphate in aerobic rice seedlings

(2012) Panhwar Q. A.   African Journal of Microbiology Research

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

(2012) John H Morris et al.   BMC BIOINFORMATICS

Chemical Ecology of Endophytic Fungi: Origins of Secondary Metabolites

(2012) Souvik Kusari et al.   CHEMISTRY & BIOLOGY

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Rice root-associated bacteria: insights into community structures across 10 cultivars

(2011) Pablo Rodrigo Hardoim et al.   FEMS MICROBIOLOGY ECOLOGY

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Increased Fitness of Rice Plants to Abiotic Stress Via Habitat Adapted Symbiosis: A Strategy for Mitigating Impacts of Climate Change

(2011) Regina S. Redman et al.   PLoS One

GLay: community structure analysis of biological networks

(2010) G. Su et al.   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Rice root colonisation by mycorrhizal and endophytic fungi in aerobic soil

(2008) M. Vallino et al.   ANNALS OF APPLIED BIOLOGY

Ammonia-oxidizing archaea: important players in paddy rhizosphere soil?

(2008) Xue-Ping Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Translocation of nitrogen and carbon integrates biotic crust and grass production in desert grassland

(2008) Laura E. Green et al.   JOURNAL OF ECOLOGY

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY