clusterMaker: a multi-algorithm clustering plugin for Cytoscape

Comprehensive cluster analysis with Transitivity Clustering

(2011) Tobias Wittkop et al.   Nature Protocols

Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution

(2010) Leonard Apeltsin et al.   BIOINFORMATICS

GLay: community structure analysis of biological networks

(2010) G. Su et al.   BIOINFORMATICS

SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale

(2010) Tamás Nepusz et al.   BMC BIOINFORMATICS

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

(2010) Aaron M Newman et al.   BMC BIOINFORMATICS

Partitioning biological data with transitivity clustering

(2010) Tobias Wittkop et al.   NATURE METHODS

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

A mouse protein interactome through combined literature mining with multiple sources of interaction evidence

(2009) Xiao Li et al.   AMINO ACIDS

jClust: a clustering and visualization toolbox

(2009) G. A. Pavlopoulos et al.   BIOINFORMATICS

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

(2009) James Vlasblom et al.   BMC BIOINFORMATICS

Identification of protein functions using a machine-learning approach based on sequence-derived properties

(2009) Bum Lee et al.   Proteome Science

Exploration of Uncharted Regions of the Protein Universe

(2009) Lukasz Jaroszewski et al.   PLOS BIOLOGY

Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer

(2008) Raffaele Giancarlo et al.   BMC BIOINFORMATICS

Homology-Free Prediction of Functional Class of Proteins and Peptides by Support Vector Machines

(2008) Y. Chen et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Using support vector machines to distinguish enzymes: Approached by incorporating wavelet transform

(2008) Jian-Ding Qiu et al.   JOURNAL OF THEORETICAL BIOLOGY

A Genetic Interaction Map of RNA-Processing Factors Reveals Links between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing

(2008) Gwendolyn M. Wilmes et al.   MOLECULAR CELL