Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

Application of a JA-Ile Biosynthesis Inhibitor to Methyl Jasmonate-Treated Strawberry Fruit Induces Upregulation of Specific MBW Complex-Related Genes and Accumulation of Proanthocyanidins

(2018) Laura Delgado et al.   MOLECULES

Full-length transcriptome sequences and the identification of putative genes for flavonoid biosynthesis in safflower

(2018) Jiang Chen et al.   BMC GENOMICS

Comprehensive Characterization for Ginsenosides Biosynthesis in Ginseng Root by Integration Analysis of Chemical and Transcriptome

(2017) Jing-Jing Zhang et al.   MOLECULES

FtSAD2 and FtJAZ1 regulate activity of the FtMYB11 transcription repressor of the phenylpropanoid pathway in Fagopyrum tataricum

(2017) Meiliang Zhou et al.   NEW PHYTOLOGIST

Regulation of growth-defense balance by the JASMONATE ZIM-DOMAIN (JAZ)-MYC transcriptional module

(2017) Ian T. Major et al.   NEW PHYTOLOGIST

Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis

(2017) Jun Li et al.   Cell Discovery

Transcriptome sequencing provides insights into the metabolic pathways of patchouli alcohol and pogostone in Pogostemon cablin (Blanco) Benth.

(2016) Yang He et al.   Genes & Genomics

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

The jasmonate-responsive AaMYC2 transcription factor positively regulates artemisinin biosynthesis inArtemisia annua

(2016) Qian Shen et al.   NEW PHYTOLOGIST

Survey of the genome of Pogostemon cablin provides insights into its evolutionary history and sesquiterpenoid biosynthesis

(2016) Yang He et al.   Scientific Reports

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus

(2016) Raj Kumar Joshi et al.   PLoS One

Methyl jasmonate induction of tanshinone biosynthesis in Salvia miltiorrhiza hairy roots is mediated by JASMONATE ZIM-DOMAIN repressor proteins

(2016) Min Shi et al.   Scientific Reports

Anti-allergic and anti-inflammatory effects of aqueous extract of Pogostemon cablin

(2015) SEOK CHEOL YOON et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

Progressive Regulation of Sesquiterpene Biosynthesis in Arabidopsis and Patchouli (Pogostemon cablin) by the miR156-Targeted SPL Transcription Factors

(2015) Zong-Xia Yu et al.   Molecular Plant

A Comprehensive Review on the Phytochemical Constituents and Pharmacological Activities of Pogostemon cablin Benth.: An Aromatic Medicinal Plant of Industrial Importance

(2015) Mallappa Swamy et al.   MOLECULES

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events

(2015) Hagen Tilgner et al.   NATURE BIOTECHNOLOGY

Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues ofSalvia miltiorrhizaand tanshinone biosynthesis

(2015) Zhichao Xu et al.   PLANT JOURNAL

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Network Analysis of the MVA and MEP Pathways for Isoprenoid Synthesis

(2013) Eva Vranová et al.   Annual Review of Plant Biology

Assessment of transcript reconstruction methods for RNA-seq

(2013) Tamara Steijger et al.   NATURE METHODS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Horizontal transfer of expressed genes in a parasitic flowering plant

(2012) Zhenxiang Xi et al.   BMC GENOMICS

Improving PacBio Long Read Accuracy by Short Read Alignment

(2012) Kin Fai Au et al.   PLoS One

Transcriptional machineries in jasmonate-elicited plant secondary metabolism

(2012) Nathan De Geyter et al.   TRENDS IN PLANT SCIENCE

The Jasmonate-Responsive AP2/ERF Transcription Factors AaERF1 and AaERF2 Positively Regulate Artemisinin Biosynthesis in Artemisia annua L.

(2011) Zong-Xia Yu et al.   Molecular Plant

APETALA2/ETHYLENE RESPONSE FACTOR and basic helix-loop-helix tobacco transcription factors cooperatively mediate jasmonate-elicited nicotine biosynthesis

(2011) Kathleen De Boer et al.   PLANT JOURNAL

Plant volatile terpenoid metabolism: Biosynthetic genes, transcriptional regulation and subcellular compartmentation

(2010) Dinesh A. Nagegowda   FEBS LETTERS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis CORONATINE INSENSITIVE1 Protein Is a Jasmonate Receptor

(2009) J. Yan et al.   PLANT CELL

Overexpression of the HMG‐CoA Reductase Gene Leads to Enhanced Artemisinin Biosynthesis in TransgenicArtemisia annuaPlants

(2009) Samina Aquil et al.   PLANTA MEDICA

Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses

(2008) Nelson J. M. Saibo et al.   ANNALS OF BOTANY

Comparison of extraction of patchouli (Pogostemon cablin) essential oil with supercritical CO2 and by steam distillation

(2008) A. Donelian et al.   JOURNAL OF SUPERCRITICAL FLUIDS

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS