Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
出版年份 2019 全文链接
标题
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
作者
关键词
-
出版物
Microbiome
Volume 7, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-05-16
DOI
10.1186/s40168-019-0689-3
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The Dimension of Time in Host-Microbiome Interactions
- (2019) Giulia T. Uhr et al. mSystems
- Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
- (2019) Laurent Heirendt et al. Nature Protocols
- Identification of a gene encoding a flavoprotein involved in bile acid metabolism by the human gut bacterium Clostridium scindens ATCC 35704
- (2018) Spencer C. Harris et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS
- Modeling metabolism of the human gut microbiome
- (2018) Stefanía Magnúsdóttir et al. CURRENT OPINION IN BIOTECHNOLOGY
- Recon3D enables a three-dimensional view of gene variation in human metabolism
- (2018) Elizabeth Brunk et al. NATURE BIOTECHNOLOGY
- KBase: The United States Department of Energy Systems Biology Knowledgebase
- (2018) Adam P Arkin et al. NATURE BIOTECHNOLOGY
- Metabolism of Oxo-Bile Acids and Characterization of Recombinant 12α-Hydroxysteroid Dehydrogenases from Bile Acid 7α-Dehydroxylating Human Gut Bacteria
- (2018) Heidi Doden et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling
- (2018) Manish Kumar et al. METABOLIC ENGINEERING
- Reply to "Challenges in modeling the human gut microbiome"
- (2018) Stefanía Magnúsdóttir et al. NATURE BIOTECHNOLOGY
- Gut microbiota and intestinal FXR mediate the clinical benefits of metformin
- (2018) Lulu Sun et al. NATURE MEDICINE
- Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers
- (2018) Vanessa L. Hale et al. Genome Medicine
- The IBD interactome: an integrated view of aetiology, pathogenesis and therapy
- (2017) Heitor S. P. de Souza et al. Nature Reviews Gastroenterology & Hepatology
- A role for bacterial urease in gut dysbiosis and Crohn’s disease
- (2017) Josephine Ni et al. Science Translational Medicine
- SteadyCom: Predicting microbial abundances while ensuring community stability
- (2017) Siu Hung Joshua Chan et al. PLoS Computational Biology
- BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
- (2017) Eugen Bauer et al. PLoS Computational Biology
- More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes
- (2017) Kees C. H. van der Ark et al. Microbiome
- A Systematic Evaluation of Methods for Tailoring Genome-Scale Metabolic Models
- (2017) Sjoerd Opdam et al. Cell Systems
- Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides
- (2017) Dmitry A. Ravcheev et al. Frontiers in Genetics
- Interaction of gut microbiota with bile acid metabolism and its influence on disease states
- (2016) Christopher Staley et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism
- (2016) Annika Wahlström et al. Cell Metabolism
- Formation of propionate and butyrate by the human colonic microbiota
- (2016) Petra Louis et al. ENVIRONMENTAL MICROBIOLOGY
- Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
- (2016) Stefanía Magnúsdóttir et al. NATURE BIOTECHNOLOGY
- MetaboTools: A Comprehensive Toolbox for Analysis of Genome-Scale Metabolic Models
- (2016) Maike K. Aurich et al. Frontiers in Physiology
- Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
- (2015) James D. Lewis et al. Cell Host & Microbe
- A biosynthetic pathway for a prominent class of microbiota-derived bile acids
- (2015) A Sloan Devlin et al. Nature Chemical Biology
- Systems biology of host-microbe metabolomics
- (2015) Almut Heinken et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Glycan cross-feeding activities between bifidobacteria under in vitro conditions
- (2015) Francesca Turroni et al. Frontiers in Microbiology
- Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
- (2015) Stefanía Magnúsdóttir et al. Frontiers in Genetics
- Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis
- (2014) Christoph A. Thaiss et al. CELL
- Dynamic flux balance analysis for synthetic microbial communities
- (2014) Michael A. Henson et al. IET Systems Biology
- Bacterial Bile Metabolising Gene Abundance in Crohn's, Ulcerative Colitis and Type 2 Diabetes Metagenomes
- (2014) Alain Labbé et al. PLoS One
- A systems biology approach to studying the role of microbes in human health
- (2012) Ines Thiele et al. CURRENT OPINION IN BIOTECHNOLOGY
- Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases
- (2012) Henri Duboc et al. GUT
- A framework for human microbiome research
- (2012) NATURE
- In search of sustainable chemical processes: cloning, recombinant expression, and functional characterization of the 7α- and 7β-hydroxysteroid dehydrogenases from Clostridium absonum
- (2011) Erica Elisa Ferrandi et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks
- (2011) S. G. Thorleifsson et al. BIOINFORMATICS
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
- (2011) G. D. Wu et al. SCIENCE
- Accessing the SEED Genome Databases via Web Services API: Tools for Programmers
- (2010) Terry Disz et al. BMC BIOINFORMATICS
- Removal of cholesterol by lactobacilli via incorporation and conversion to coprostanol
- (2010) H.-S. Lye et al. JOURNAL OF DAIRY SCIENCE
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- MicrobesOnline: an integrated portal for comparative and functional genomics
- (2009) P. S. Dehal et al. NUCLEIC ACIDS RESEARCH
- Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
- (2008) Markus W. Covert et al. BIOINFORMATICS
- Shotgun metaproteomics of the human distal gut microbiota
- (2008) Nathan C Verberkmoes et al. ISME Journal
- Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome
- (2008) B. V. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
- (2008) H. Sokol et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Symbiotic gut microbes modulate human metabolic phenotypes
- (2008) M. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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