Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

Tree genotype and genetically based growth traits structure twig endophyte communities

(2014) Louis J. Lamit et al.   AMERICAN JOURNAL OF BOTANY

Predicting the activity ofHeterobasidion parviporumon Norway spruce in warming climate from its respiration rate at different temperatures

(2014) M. M. Müller et al.   FOREST PATHOLOGY

An Illumina metabarcoding pipeline for fungi

(2014) Miklós Bálint et al.   Ecology and Evolution

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns

(2013) Anjuli Meiser et al.   NEW PHYTOLOGIST

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Endophytes in changing environments - do we need new concepts in forest management?

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Crop pests and pathogens move polewards in a warming world

(2013) Daniel P. Bebber et al.   Nature Climate Change

Leaf endophytes andPopulusgenotype affect severity of damage from the necrotrophic leaf pathogen,Drepanopeziza populi

(2013) Posy E. Busby et al.   Ecosphere

Climate Change, Aboveground-Belowground Interactions, and Species' Range Shifts

(2012) Wim H. Van der Putten   Annual Review of Ecology Evolution and Systematics

The Human Microbiome: Our Second Genome

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PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Impacts of climate change on the future of biodiversity

(2012) Céline Bellard et al.   ECOLOGY LETTERS

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)

(2012) Tristan Cordier et al.   Fungal Ecology

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

(2012) S. R. Keller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

(2012) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

The impact of global climate change on genetic diversity within populations and species

(2012) Steffen U. Pauls et al.   MOLECULAR ECOLOGY

The adaptive potential ofPopulus balsamiferaL. to phenology requirements in a warmer global climate

(2012) Matthew S. Olson et al.   MOLECULAR ECOLOGY

Spatio-temporal dynamics of endophyte diversity in the canopy of European ash (Fraxinus excelsior)

(2012) Almut Scholtysik et al.   MYCOLOGICAL PROGRESS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The contribution of foliar endophytes to quantitative resistance toMelampsorarust

(2012) Anil K. H. Raghavendra et al.   NEW PHYTOLOGIST

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

(2012) N. B. Zimmerman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disturbance-diversity models: what do they really predict and how are they tested?

(2012) J. R. Svensson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic consequences of climate change for northern plants

(2012) I. G. Alsos et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Effect of warming and drought on grassland microbial communities

(2011) Cody S Sheik et al.   ISME Journal

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Forward from the crossroads of ecology and evolution

(2011) J. K. Rowntree et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Rapid Range Shifts of Species Associated with High Levels of Climate Warming

(2011) I.-C. Chen et al.   SCIENCE

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

Cryptic biodiversity loss linked to global climate change

(2011) M. Bálint et al.   Nature Climate Change

Climate-driven local adaptation of ecophysiology and phenology in balsam poplar, Populus balsamifera L. (Salicaceae)

(2010) Stephen R. Keller et al.   AMERICAN JOURNAL OF BOTANY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

(2010) R. Henrik Nilsson et al.   Fungal Ecology

Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees

(2010) David Parfitt et al.   Fungal Ecology

Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models

(2010) Simon N. Wood   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Genomic diversity, population structure, and migration following rapid range expansion in the Balsam Poplar,Populus balsamifera

(2010) STEPHEN R. KELLER et al.   MOLECULAR ECOLOGY

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Low temperature induced defence gene expression in winter wheat in relation to resistance to snow moulds and other wheat diseases

(2010) D.A. Gaudet et al.   PLANT SCIENCE

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

(2010) Gregory B. Gloor et al.   PLoS One

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Plant–soil interactions in the expansion and native range of a poleward shifting plant species

(2009) ROY H. A. Van GRUNSVEN et al.   GLOBAL CHANGE BIOLOGY

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Enhanced assimilation rate and water use efficiency with latitude through increased photosynthetic capacity and internal conductance in balsam poplar (Populus balsamiferaL.)

(2009) RAJU Y. SOOLANAYAKANAHALLY et al.   PLANT CELL AND ENVIRONMENT

Host specificity and speciation of Mycosphaerella and Teratosphaeria species associated with leaf spots of Proteaceae

(2008) P.W. Crous et al.   PERSOONIA

ECOLOGY: Assisted Colonization and Rapid Climate Change

(2008) O. Hoegh-Guldberg et al.   SCIENCE