High-resolution mapping reveals that microniches in the gastric glands control Helicobacter pylori colonization of the stomach

Colonization, localization, and inflammation: the roles of H. pylori chemotaxis in vivo

(2018) Kevin S Johnson et al.   CURRENT OPINION IN MICROBIOLOGY

Chemotaxis Allows Bacteria To Overcome Host-Generated Reactive Oxygen Species That Constrain Gland Colonization

(2018) Kieran D. Collins et al.   INFECTION AND IMMUNITY

Eosinophils suppress Th1 responses and restrict bacterially induced gastrointestinal inflammation

(2018) Isabelle C. Arnold et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Fluorescent Mycobacterium tuberculosis reporters: illuminating host–pathogen interactions

(2018) Nathan J MacGilvary et al.   Pathogens and Disease

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains

(2017) Jenny L. Draper et al.   mBio

Multiple Acid Sensors Control Helicobacter pylori Colonization of the Stomach

(2017) Julie Y. Huang et al.   PLoS Pathogens

CagY Is an Immune-Sensitive Regulator of the Helicobacter pylori Type IV Secretion System

(2016) Roberto M. Barrozo et al.   GASTROENTEROLOGY

The Helicobacter pylori CZB Cytoplasmic Chemoreceptor TlpD Forms an Autonomous Polar Chemotaxis Signaling Complex That Mediates a Tactic Response to Oxidative Stress

(2016) Kieran D. Collins et al.   JOURNAL OF BACTERIOLOGY

Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling

(2016) William H. DePas et al.   mBio

Spatial and Temporal Shifts in Bacterial Biogeography and Gland Occupation during the Development of a Chronic Infection

(2016) Daniela Keilberg et al.   mBio

Localisation and protein-protein interactions of the Helicobacter pylori taxis sensor TlpD and their connection to metabolic functions

(2016) Wiebke Behrens et al.   Scientific Reports

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Community Behavior and Spatial Regulation within a Bacterial Microcolony in Deep Tissue Sites Serves to Protect against Host Attack

(2015) Kimberly M. Davis et al.   Cell Host & Microbe

Heterogeneous Host-Pathogen Encounters: Act Locally, Think Globally

(2015) Dirk Bumann   Cell Host & Microbe

CLARITY and PACT-based imaging of adult zebrafish and mouse for whole-animal analysis of infections

(2015) M. R. Cronan et al.   Disease Models & Mechanisms

Helicobacter pylori Activates and Expands Lgr5+ Stem Cells Through Direct Colonization of the Gastric Glands

(2015) Michael Sigal et al.   GASTROENTEROLOGY

Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping

(2015) Jennifer B Treweek et al.   Nature Protocols

Chemorepulsion from the Quorum Signal Autoinducer-2 Promotes Helicobacter pylori Biofilm Dispersal

(2015) Jeneva K. Anderson et al.   mBio

Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing

(2014) Bin Yang et al.   CELL

Intraspecies Competition for Niches in the Distal Gut Dictate Transmission during Persistent Salmonella Infection

(2014) Lilian H. Lam et al.   PLoS Pathogens

Insights into Vibrio cholerae Intestinal Colonization from Monitoring Fluorescently Labeled Bacteria

(2014) Yves A. Millet et al.   PLoS Pathogens

Bacterial colonization factors control specificity and stability of the gut microbiota

(2013) S. Melanie Lee et al.   NATURE

Helicobacter pylori  -glutamyl transpeptidase and vacuolating cytotoxin promote gastric persistence and immune tolerance

(2013) M. Oertli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clonality Analysis ofHelicobacter pyloriin Patients Isolated from Several Biopsy Specimens and Gastric Juice in a Japanese Urban Population by Random Amplified Polymorphic DNA Fingerprinting

(2013) Nariaki Toita et al.   Gastroenterology Research and Practice

Mycobacterium tuberculosis Responds to Chloride and pH as Synergistic Cues to the Immune Status of its Host Cell

(2013) Shumin Tan et al.   PLoS Pathogens

Intestinal colonization resistance

(2012) Trevor D. Lawley et al.   IMMUNOLOGY

DC-derived IL-18 drives Treg differentiation, murine Helicobacter pylori–specific immune tolerance, and asthma protection

(2012) Mathias Oertli et al.   JOURNAL OF CLINICAL INVESTIGATION

A Crypt-Specific Core Microbiota Resides in the Mouse Colon

(2012) T. Pedron et al.   mBio

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Helicobacter pylori perceives the quorum-sensing molecule AI-2 as a chemorepellent via the chemoreceptor TlpB

(2011) B. A. Rader et al.   MICROBIOLOGY-SGM

The Antibacterial Lectin RegIII  Promotes the Spatial Segregation of Microbiota and Host in the Intestine

(2011) S. Vaishnava et al.   SCIENCE

ChePep Controls Helicobacter pylori Infection of the Gastric Glands and Chemotaxis in the Epsilonproteobacteria

(2011) M. R. Howitt et al.   mBio

Helicobacter pylori Perturbs Iron Trafficking in the Epithelium to Grow on the Cell Surface

(2011) Shumin Tan et al.   PLoS Pathogens

Tolerance Rather Than Immunity Protects From Helicobacter pylori–Induced Gastric Preneoplasia

(2010) Isabelle C. Arnold et al.   GASTROENTEROLOGY

A Bistable Switch and Anatomical Site Control Vibrio cholerae Virulence Gene Expression in the Intestine

(2010) Alex T. Nielsen et al.   PLoS Pathogens

Helicobacter pylori moves through mucus by reducing mucin viscoelasticity

(2009) J. P. Celli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Helicobacter pylori Usurps Cell Polarity to Turn the Cell Surface into a Replicative Niche

(2009) Shumin Tan et al.   PLoS Pathogens

Functional Characterization and Mutagenesis of the Proposed Behavioral Sensor TlpD of Helicobacter pylori

(2008) T. Schweinitzer et al.   JOURNAL OF BACTERIOLOGY

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

(2008) M. E. V. Johansson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA