Concurrent isotope-assisted metabolic flux analysis and transcriptome profiling reveal responses of poplar cells to altered nitrogen and carbon supply

Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency

(2016) Min Chen et al.   MOLECULAR GENETICS AND GENOMICS

Enzyme activity and gene expression profiles of Xanthobacter autotrophicus GJ10 during aerobic biodegradation of 1,2-dichloroethane

(2015) Ajit Kumar et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Lipid accumulation in response to nitrogen limitation and variation of temperature in Nannochloropsis salina

(2015) Eman M Fakhry et al.   Botanical Studies

Metabolomic and13C-metabolic flux analysis of a xylose-consumingSaccharomyces cerevisiaestrain expressing xylose isomerase

(2014) Thomas M. Wasylenko et al.   BIOTECHNOLOGY AND BIOENGINEERING

Tyr-301 Phosphorylation Inhibits Pyruvate Dehydrogenase by Blocking Substrate Binding and Promotes the Warburg Effect

(2014) Jun Fan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomics of Nitrogen Remobilization in Poplar Bark

(2014) Nazrul Islam et al.   JOURNAL OF PROTEOME RESEARCH

Metabolic flux phenotype of tobacco hairy roots engineered for increased geraniol production

(2014) Shyam K. Masakapalli et al.   PHYTOCHEMISTRY

The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a flexible balance between the cytosolic and plastidic contributions to carbohydrate oxidation in response to phosphate limitation

(2014) Shyam K. Masakapalli et al.   PLANT JOURNAL

The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation inChlamydomonas reinhardtii

(2014) Matthew T. Juergens et al.   PLANT PHYSIOLOGY

Isotopically nonstationary13C flux analysis of changes inArabidopsis thalianaleaf metabolism due to high light acclimation

(2014) Fangfang Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments

(2014) Javier Canales et al.   Frontiers in Plant Science

Central metabolic responses to the overproduction of fatty acids inEscherichia colibased on13C-metabolic flux analysis

(2013) Lian He et al.   BIOTECHNOLOGY AND BIOENGINEERING

Pyruvate decarboxylase activity is regulated by the Ser/Thr protein phosphatase Sit4p in the yeastSaccharomyces cerevisiae

(2013) Leandro José de Assis et al.   FEMS YEAST RESEARCH

Influence of carbon to nitrogen ratios on soybean somatic embryo (cv. Jack) growth and composition

(2013) Quyen Truong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Flux and reflux: metabolite reflux in plant suspension cells and its implications for isotope-assisted metabolic flux analysis

(2013) Shilpa Nargund et al.   Molecular BioSystems

Covalent bond formation between amino acids and lignin: Cross-coupling between proteins and lignin

(2013) Fang Cong et al.   PHYTOCHEMISTRY

The metabolic flux phenotype of heterotrophic Arabidopsis cells reveals a complex response to changes in nitrogen supply

(2013) Shyam K. Masakapalli et al.   PLANT JOURNAL

Requirement for the plastidial oxidative pentose phosphate pathway for nitrate assimilation in Arabidopsis

(2013) John D. Bussell et al.   PLANT JOURNAL

Metabolic flux analysis using13C peptide label measurements

(2013) Dominic E. Mandy et al.   PLANT JOURNAL

Carbon and Nitrogen Provisions Alter the Metabolic Flux in Developing Soybean Embryos

(2013) D. K. Allen et al.   PLANT PHYSIOLOGY

Plant cytoplasmic GAPDH: redox post-translational modifications and moonlighting properties

(2013) Mirko Zaffagnini et al.   Frontiers in Plant Science

Increased lysine production by flux coupling of the tricarboxylic acid cycle and the lysine biosynthetic pathway—Metabolic engineering of the availability of succinyl-CoA in Corynebacterium glutamicum

(2012) Stefanie Kind et al.   METABOLIC ENGINEERING

Designer labels for plant metabolism: statistical design of isotope labeling experiments for improved quantification of flux in complex plant metabolic networks

(2012) Shilpa Nargund et al.   Molecular BioSystems

Maize Source Leaf Adaptation to Nitrogen Deficiency Affects Not Only Nitrogen and Carbon Metabolism But Also Control of Phosphate Homeostasis

(2012) U. Schluter et al.   PLANT PHYSIOLOGY

Correlation of gene expression and protein production rate - a system wide study

(2011) Mikko Arvas et al.   BMC GENOMICS

Evolutionary engineered Saccharomyces cerevisiae wine yeast strains with increased in vivo flux through the pentose phosphate pathway

(2011) Axelle Cadière et al.   METABOLIC ENGINEERING

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms

(2011) Andrew E. Allen et al.   NATURE

The Response of Diatom Central Carbon Metabolism to Nitrogen Starvation Is Different from That of Green Algae and Higher Plants

(2011) N. L. Hockin et al.   PLANT PHYSIOLOGY

PENTOSE PHOSPHATE PATHWAY FLUX ANALYSIS FOR GLYCOPEPTIDE ANTIBIOTIC VANCOMYCIN PRODUCTION DURING GLUCOSE-LIMITED CULTIVATION OFAmycolatopsis orientalis

(2011) Hulya Ayar-Kayali   PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

Diurnal Changes in Mitochondrial Function Reveal Daily Optimization of Light and Dark Respiratory Metabolism inArabidopsis

(2010) Chun Pong Lee et al.   MOLECULAR & CELLULAR PROTEOMICS

Metabolic and Signaling Aspects Underpinning the Regulation of Plant Carbon Nitrogen Interactions

(2010) Adriano Nunes-Nesi et al.   Molecular Plant

Effects of N, P, K and S on metabolism: new knowledge gained from multi-level analysis

(2009) Anna Amtmann et al.   CURRENT OPINION IN PLANT BIOLOGY

Covalently Bound Substrate at the Regulatory Site of Yeast Pyruvate Decarboxylases Triggers Allosteric Enzyme Activation

(2009) Steffen Kutter et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

13C-based metabolic flux analysis

(2009) Nicola Zamboni et al.   Nature Protocols

Subcellular Flux Analysis of Central Metabolism in a Heterotrophic Arabidopsis Cell Suspension Using Steady-State Stable Isotope Labeling

(2009) S. K. Masakapalli et al.   PLANT PHYSIOLOGY

Analysis of Metabolic Flux Phenotypes for Two Arabidopsis Mutants with Severe Impairment in Seed Storage Lipid Synthesis

(2009) J. Lonien et al.   PLANT PHYSIOLOGY

A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties

(2009) M. G. Poolman et al.   PLANT PHYSIOLOGY

A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis

(2009) Gabriel Krouk et al.   PLoS Computational Biology

The OSU1/QUA2/TSD2-Encoded Putative Methyltransferase Is a Critical Modulator of Carbon and Nitrogen Nutrient Balance Response in Arabidopsis

(2008) Peng Gao et al.   PLoS One

Global metabolic effects of glycerol kinase overexpression in rat hepatoma cells

(2007) Ganesh Sriram et al.   MOLECULAR GENETICS AND METABOLISM