Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

Quantification provides a conceptual basis for convergent evolution

(2016) Michael P. Speed et al.   BIOLOGICAL REVIEWS

Extensive horizontal gene transfers between plant pathogenic fungi

(2016) Huan Qiu et al.   BMC BIOLOGY

Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

(2016) Adriaan Vanheule et al.   BMC GENOMICS

Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

(2016) Sean Walkowiak et al.   BMC GENOMICS

Insights into natural products biosynthesis from analysis of 490 polyketide synthases from Fusarium

(2016) Daren W. Brown et al.   FUNGAL GENETICS AND BIOLOGY

Comparative “Omics” of theFusarium fujikuroiSpecies Complex Highlights Differences in Genetic Potential and Metabolite Synthesis

(2016) Eva-Maria Niehaus et al.   Genome Biology and Evolution

A polyphasic approach for characterization of a collection of cereal isolates of the Fusarium incarnatum-equiseti species complex

(2016) Alessandra Villani et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Two novel Fusarium species that cause canker disease of prickly ash (Zanthoxylum bungeanum) in northern China form a novel clade with Fusarium torreyae

(2016) Xue Zhou et al.   MYCOLOGIA

Fusarium agapanthi sp. nov., a novel bikaverin and fusarubin-producing leaf and stem spot pathogen of Agapanthus praecox (African lily) from Australia and Italy

(2016) Jacqueline Edwards et al.   MYCOLOGIA

Variation in Fumonisin and Ochratoxin Production Associated with Differences in Biosynthetic Gene Content in Aspergillus niger and A. welwitschiae Isolates from Multiple Crop and Geographic Origins

(2016) Antonia Susca et al.   Frontiers in Microbiology

Six novel species of Fusarium from natural ecosystems in Australia

(2015) M. H. Laurence et al.   FUNGAL DIVERSITY

An update to polyketide synthase and non-ribosomal synthetase genes and nomenclature in Fusarium

(2015) Frederik T. Hansen et al.   FUNGAL GENETICS AND BIOLOGY

Hydroxylation of Longiborneol by a Clm2-Encoded CYP450 Monooxygenase to Produce Culmorin in Fusarium graminearum

(2015) Adilah Bahadoor et al.   JOURNAL OF NATURAL PRODUCTS

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Evolution of Chemical Diversity in a Group of Non-Reduced Polyketide Gene Clusters: Using Phylogenetics to Inform the Search for Novel Fungal Natural Products

(2015) Kurt Throckmorton et al.   Toxins

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Variation in the fumonisin biosynthetic gene cluster in fumonisin-producing and nonproducing black aspergilli

(2014) Antonia Susca et al.   FUNGAL GENETICS AND BIOLOGY

Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees

(2014) Leonidas Salichos et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Genome of the Generalist Plant Pathogen Fusarium avenaceum Is Enriched with Genes Involved in Redox, Signaling and Secondary Metabolism

(2014) Erik Lysøe et al.   PLoS One

Two Related Pyrrolidinedione Synthetase Loci in Fusarium heterosporum ATCC 74349 Produce Divergent Metabolites

(2013) Thomas B. Kakule et al.   ACS Chemical Biology

Identification of the First Diphenyl Ether Gene Cluster for Pestheic Acid Biosynthesis in Plant EndophytePestalotiopsis fici

(2013) Xinxin Xu et al.   CHEMBIOCHEM

Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria

(2013) Kerry O’Donnell et al.   FUNGAL GENETICS AND BIOLOGY

Molecular biodiversity of mycotoxigenic fungi that threaten food safety

(2013) A. Moretti et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification ofFusarium

(2013) Robert H. Proctor et al.   MOLECULAR MICROBIOLOGY

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Phylogenetic Study of Polyketide Synthases and Nonribosomal Peptide Synthetases Involved in the Biosynthesis of Mycotoxins

(2013) Antonia Gallo et al.   Toxins

Genome-Based Cluster Deletion Reveals an Endocrocin Biosynthetic Pathway in Aspergillus fumigatus

(2012) Fang Yun Lim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

(2012) Maureen Stolzer et al.   BIOINFORMATICS

Phylogenetic analyses and toxigenic profiles of Fusarium equiseti and Fusarium acuminatum isolated from cereals from Southern Europe

(2012) Patricia Marín et al.   FOOD MICROBIOLOGY

Horizontal Transfer and Death of a Fungal Secondary Metabolic Gene Cluster

(2012) Matthew A. Campbell et al.   Genome Biology and Evolution

Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST

(2012) Kerry O’Donnell et al.   MYCOLOGIA

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Comparative Pathogenomics Reveals Horizontally Acquired Novel Virulence Genes in Fungi Infecting Cereal Hosts

(2012) Donald M. Gardiner et al.   PLoS Pathogens

Molecular phylogeny of the higher and lower taxonomy of the Fusarium genus and differences in the evolutionary histories of multiple genes

(2011) Maiko Watanabe et al.   BMC EVOLUTIONARY BIOLOGY

Widespread Occurrence of Diverse Human Pathogenic Types of the Fungus Fusarium Detected in Plumbing Drains

(2011) D. P. G. Short et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome-Based Deletion Analysis Reveals the Prenyl Xanthone Biosynthesis Pathway inAspergillus nidulans

(2011) James F. Sanchez et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships

(2010) Kathryn E Bushley et al.   BMC EVOLUTIONARY BIOLOGY

Internet-Accessible DNA Sequence Database for Identifying Fusaria from Human and Animal Infections

(2010) K. O'Donnell et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Novel Multilocus Sequence Typing Scheme Reveals High Genetic Diversity of Human Pathogenic Members of the Fusarium incarnatum-F. equiseti and F. chlamydosporum Species Complexes within the United States

(2009) K. O'Donnell et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics