Mapping the diversity of microbial lignin catabolism: experiences from the eLignin database

Identification of the protocatechuate transporter gene in Sphingobium sp. strain SYK-6 and effects of overexpression on production of a value-added metabolite

(2018) Kosuke Mori et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The current and emerging sources of technical lignins and their applications

(2018) Tao Li et al.   Biofuels Bioproducts & Biorefining-Biofpr

Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization

(2018) Eduardo C. Moraes et al.   Biotechnology for Biofuels

Bright Side of Lignin Depolymerization: Toward New Platform Chemicals

(2018) Zhuohua Sun et al.   CHEMICAL REVIEWS

Biodegradation of kraft lignin by newly isolated Klebsiella pneumoniae, Pseudomonas putida, and Ochrobactrum tritici strains

(2018) Zhaoxian Xu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Quantitative analysis of products from lignin depolymerisation in high-temperature water

(2018) Eduardo Pérez et al.   EUROPEAN POLYMER JOURNAL

Screening of fungi for decomposition of lignin-derived products from Japanese cedar

(2018) Yohtaro Saito et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Bacterial strains isolated from cedar wood improve the mycelial growth and morphology of white rot fungus Phlebia brevispora on agar and liquid medium

(2018) Joy L. Harry-asobara et al.   JOURNAL OF WOOD SCIENCE

Growth of sedimentaryBathyarchaeotaon lignin as an energy source

(2018) Tiantian Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy

(2018) S.T. Barsberg et al.   SEED SCIENCE RESEARCH

Brevibacillus parabrevis MTCC 12105: a potential bacterium for pulp and paper effluent degradation

(2018) Rajni Hooda et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion

(2018) Sam J. B. Mallinson et al.   Nature Communications

Biological conversion of aromatic monolignol compounds by a Pseudomonas isolate from sediments of the Baltic Sea

(2018) Krithika Ravi et al.   AMB Express

Multi-omic elucidation of aromatic catabolism in adaptively evolved Rhodococcus opacus

(2018) William R. Henson et al.   METABOLIC ENGINEERING

A highly stable laccase obtained by swapping the second cupredoxin domain

(2018) Isabel Pardo et al.   Scientific Reports

Degradation of cinnamic acid by a newly isolated bacterium Stenotrophomonas sp. TRMK2

(2018) T. R. Monisha et al.   3 Biotech

Alternatives for Chemical and Biochemical Lignin Valorization: Hot Topics from a Bibliometric Analysis of the Research Published During the 2000–2016 Period

(2018) Ricardo Abejón et al.   Processes

Biodelignification and hydrolysis of rice straw by novel bacteria isolated from wood feeding termite

(2018) Bahiru Tsegaye et al.   3 Biotech

Isolation and characterization ofRhizobiumsp. strain YS-1r that degrades lignin in plant biomass

(2017) C.A. Jackson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Isolation, identification and characterization of lignin-degrading bacteria from Qinling, China

(2017) C.-X. Yang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Metabolism of aromatics by Trichosporon oleaginosus while remaining oleaginous

(2017) Allison Yaguchi et al.   Microbial Cell Factories

Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism

(2017) Naofumi Kamimura et al.   Environmental Microbiology Reports

Wheat Straw Degradation by Trametes gibbosa: The Effect of Calcium Ions

(2017) Aleksandar Knežević et al.   Waste and Biomass Valorization

Biological valorization of low molecular weight lignin

(2016) Omar Y. Abdelaziz et al.   BIOTECHNOLOGY ADVANCES

Opportunities and challenges in biological lignin valorization

(2016) Gregg T Beckham et al.   CURRENT OPINION IN BIOTECHNOLOGY

Achromobacter denitrificans SP1 efficiently utilizes 16 phthalate diesters and their downstream products through protocatechuate 3,4-cleavage pathway

(2016) Sailas Benjamin et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Synergistic enzymatic and microbial lignin conversion

(2016) Cheng Zhao et al.   GREEN CHEMISTRY

Investigation of lignin biodegradation by Trabulsiella sp. isolated from termite gut

(2016) Sunil Kumar Suman et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Biological pretreatment of corn stover with white-rot fungus for improved enzymatic hydrolysis

(2016) Badal C. Saha et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Evaluation of bioremediation potentiality of ligninolytic Serratia liquefaciens for detoxification of pulp and paper mill effluent

(2016) Izharul Haq et al.   JOURNAL OF HAZARDOUS MATERIALS

Phoma herbarum, a soil fungus able to grow on natural lignin and synthetic lignin (DHP) as sole carbon source and cause lignin degradation

(2016) Ran Bi et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Kraft Lignin Biodegradation by Dysgonomonas sp. WJDL-Y1, a New Anaerobic Bacterial Strain Isolated from Sludge of a Pulp and Paper Mill

(2016) Jing Duan et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Isolation of bacterial strains able to metabolize lignin and lignin-related compounds

(2016) J.-H. Tian et al.   LETTERS IN APPLIED MICROBIOLOGY

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Lignocellulose degradation mechanisms across the Tree of Life

(2015) Simon M Cragg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Adipic acid production from lignin

(2015) Derek R. Vardon et al.   Energy & Environmental Science

Investigating the degradation process of kraft lignin by β-proteobacterium, Pandoraea sp. ISTKB

(2015) Madan Kumar et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Isolation of an extremely halophilic arhaeon Natrialba sp. C21 able to degrade aromatic compounds and to produce stable biosurfactant at high salinity

(2015) Souad Khemili-Talbi et al.   EXTREMOPHILES

Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans

(2015) Gabriela Gérecová et al.   FEMS YEAST RESEARCH

The old 3-oxoadipate pathway revisited: New insights in the catabolism of aromatics in the saprophytic fungus Aspergillus nidulans

(2015) Tiago M. Martins et al.   FUNGAL GENETICS AND BIOLOGY

Biodegradation of kraft lignin by a newly isolated anaerobic bacterial strain,Acetoanaerobiumsp. WJDL-Y2

(2015) J. Duan et al.   LETTERS IN APPLIED MICROBIOLOGY

PubChem Substance and Compound databases

(2015) Sunghwan Kim et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2015) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Screening and Identification of Ligninolytic Bacteria for the Treatment of Pulp and Paper Mill Effluent

(2015) Rajni Hooda et al.   WATER AIR AND SOIL POLLUTION

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

(2015) Andrew F. Billings et al.   Standards in Genomic Sciences

Transformation of Lignin-Derived Aromatics into Nonaromatic Polymeric Substances with Fluorescent Activities (NAPSFA) by Pseudomonas sp. ITH-SA-1

(2015) Noriyuki Iwabuchi et al.   ACS Sustainable Chemistry & Engineering

Screening of Marine Bacteria To Synthesize Polyhydroxyalkanoate from Lignin: Contribution of Lignin Derivatives to Biosynthesis by Oceanimonas doudoroffii

(2015) Keiji Numata et al.   ACS Sustainable Chemistry & Engineering

Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2

(2015) Hannah L Woo et al.   Standards in Genomic Sciences

Occurrence of lignin degradation genotypes and phenotypes among prokaryotes

(2014) Jiang-Hao Tian et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Isolation of Paenibacillus glucanolyticus from pulp mill sources with potential to deconstruct pulping waste

(2014) Stephanie L. Mathews et al.   BIORESOURCE TECHNOLOGY

Screening of microscopic fungi and their enzyme activities for decolorization and biotransformation of some aromatic compounds

(2014) T. Korniłłowicz-Kowalska et al.   International Journal of Environmental Science and Technology

Characterization of p-Hydroxycinnamate Catabolism in a Soil Actinobacterium

(2014) H. Otani et al.   JOURNAL OF BACTERIOLOGY

Plant lignin content altered by soil microbial community

(2014) Alison E. Bennett et al.   NEW PHYTOLOGIST

Lignin valorization through integrated biological funneling and chemical catalysis

(2014) J. G. Linger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lignin Valorization: Improving Lignin Processing in the Biorefinery

(2014) A. J. Ragauskas et al.   SCIENCE

Breaking Down Lignin to High-Value Chemicals: The Conversion of Lignocellulose to Vanillin in a Gene Deletion Mutant of Rhodococcus jostii RHA1

(2013) Paul D. Sainsbury et al.   ACS Chemical Biology

Biochemical investigation of kraft lignin degradation by Pandoraea sp. B-6 isolated from bamboo slips

(2013) Yan Shi et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Characterization of anaerobic consortia coupled lignin depolymerization with biomethane generation

(2013) Yi-Rui Wu et al.   BIORESOURCE TECHNOLOGY

A novel lignin degradation bacterial consortium for efficient pulping

(2013) Yanxia Wang et al.   BIORESOURCE TECHNOLOGY

Isolation of Bacillus sp. strains capable of decomposing alkali lignin and their application in combination with lactic acid bacteria for enhancing cellulase performance

(2013) Young-Cheol Chang et al.   BIORESOURCE TECHNOLOGY

Isolation and characterization of lignin-degrading bacteria from rainforest soils

(2013) Xing-Feng Huang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Isolation and characterization of bacteria capable of metabolizing lignin-derived low molecular weight compounds

(2013) Jun Hirose et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8

(2013) Yan Shi et al.   Biotechnology for Biofuels

Isolation of a rice endophytic bacterium,Pantoeasp. Sd-1, with ligninolytic activity and characterization of its rice straw degradation ability

(2013) X. Q. Xiong et al.   LETTERS IN APPLIED MICROBIOLOGY

Catechol 2,3-dioxygenase and othermeta-cleavage catabolic pathway genes in the ‘anaerobic’ termite gut spirocheteTreponema primitia

(2013) Kaitlyn S. Lucey et al.   MOLECULAR ECOLOGY

The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates

(2013) Robert C. Salmon et al.   PLoS One

Aromatic Hydrocarbon Degradation by Halophilic Archaea Isolated from Çamaltı Saltern, Turkey

(2013) Sevim Feyza Erdoğmuş et al.   WATER AIR AND SOIL POLLUTION

Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1

(2013) Kristen M. DeAngelis et al.   Frontiers in Microbiology

Lignin: untapped biopolymers in biomass conversion technologies

(2013) Manimaran Ayyachamy et al.   Biomass Conversion and Biorefinery

MhbT Is a Specific Transporter for 3-Hydroxybenzoate Uptake by Gram-Negative Bacteria

(2012) Ying Xu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assimilation of aromatic compounds by Comamonas testosteroni: characterization and spreadability of protocatechuate 4,5-cleavage pathway in bacteria

(2012) Bin Ni et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Kraft lignin biodegradation by Novosphingobium sp. B-7 and analysis of the degradation process

(2012) Yuehui Chen et al.   BIORESOURCE TECHNOLOGY

Aerobic degradation of aromatic compounds

(2012) Eduardo Díaz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Isolation and characterization ofStreptomycesspp. strains F-6 and F-7 capable of decomposing alkali lignin

(2012) Y. S. Yang et al.   ENVIRONMENTAL TECHNOLOGY

Screening of fungi capable of highly selective degradation of lignin in rice straw

(2012) Alexander J. Chang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Degradation of native wheat straw lignin by Streptomyces viridosporus T7A

(2012) J. Zeng et al.   International Journal of Environmental Science and Technology

Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips

(2012) Y.H. Chen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Isolation of bacterial strains able to metabolize lignin from screening of environmental samples

(2012) C.R. Taylor et al.   JOURNAL OF APPLIED MICROBIOLOGY

Responses of Pseudomonas putida to toxic aromatic carbon sources

(2012) Tino Krell et al.   JOURNAL OF BIOTECHNOLOGY

Characterization of Transport Proteins for Aromatic Compounds Derived from Lignin: Benzoate Derivative Binding Proteins

(2012) Karolina Michalska et al.   JOURNAL OF MOLECULAR BIOLOGY

Degradation of aromatic compounds through the β-ketoadipate pathway is required for pathogenicity of the tomato wilt pathogenFusarium oxysporumf. sp.lycopersici

(2012) Caroline B. Michielse et al.   MOLECULAR PLANT PATHOLOGY

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

(2012) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

A polymer of caffeyl alcohol in plant seeds

(2012) F. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cultivation of unculturable soil bacteria

(2012) Van H.T. Pham et al.   TRENDS IN BIOTECHNOLOGY

Bio-refinery system in a pulp mill for methanol production with comparison of pressurized black liquor gasification and dry gasification using direct causticization

(2011) Muhammad Naqvi et al.   APPLIED ENERGY

Bioconversion of lignin model compounds with oleaginous Rhodococci

(2011) Matyas Kosa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Isolation and characterization of a fungus Aspergillus sp. strain F-3 capable of degrading alkali lignin

(2011) Y. S. Yang et al.   BIODEGRADATION

Flavin-containing monooxygenases from Phanerochaete chrysosporium responsible for fungal metabolism of phenolic compounds

(2011) Tomofumi Nakamura et al.   BIODEGRADATION

Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential

(2011) Luaine Bandounas et al.   BMC BIOTECHNOLOGY

Environment sensing and response mediated by ABC transporters

(2011) Sarah E Giuliani et al.   BMC GENOMICS

Patterns of lignin degradation and oxidative enzyme secretion by different wood- and litter-colonizing basidiomycetes and ascomycetes grown on beech-wood

(2011) Christiane Liers et al.   FEMS MICROBIOLOGY ECOLOGY

Gentisate and 3-oxoadipate pathways in the yeast Candida parapsilosis: identification and functional analysis of the genes coding for 3-hydroxybenzoate 6-hydroxylase and 4-hydroxybenzoate 1-hydroxylase

(2011) Z. Holesova et al.   MICROBIOLOGY-SGM

Wood decomposing abilities of diverse lignicolous fungi on nondecayed and decayed beech wood

(2011) Yu Fukasawa et al.   MYCOLOGIA

Pathways for degradation of lignin in bacteria and fungi

(2011) Timothy D. H. Bugg et al.   NATURAL PRODUCT REPORTS

Microbial degradation of aromatic compounds — from one strategy to four

(2011) Georg Fuchs et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil

(2011) Kristen M. DeAngelis et al.   PLoS One

Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes

(2011) Luka Ausec et al.   PLoS One

Characterization of the Protocatechuate 4,5-Cleavage Pathway Operon in Comamonas sp. Strain E6 and Discovery of a Novel Pathway Gene

(2010) N. Kamimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cresols utilization by Trametes versicolor and substrate interactions in the mixture with phenol

(2010) Zlatka Alexieva et al.   BIODEGRADATION

Regioselective carboxylation of catechol by 3,4-dihydroxybenzoate decarboxylase of Enterobacter cloacae P

(2010) Toyokazu Yoshida et al.   BIOTECHNOLOGY LETTERS

Genome-wide investigation and functional characterization of the β-ketoadipate pathway in the nitrogen-fixing and root-associated bacterium Pseudomonas stutzeri A1501

(2010) Danhua Li et al.   BMC MICROBIOLOGY

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals

(2010) Joseph Zakzeski et al.   CHEMICAL REVIEWS

The emerging role for bacteria in lignin degradation and bio-product formation

(2010) Timothy DH Bugg et al.   CURRENT OPINION IN BIOTECHNOLOGY

Fractionation, analysis, and PCA modeling of properties of four technical lignins for prediction of their application potential in binders

(2010) Richard J.A. Gosselink et al.   HOLZFORSCHUNG

Degradation of polycyclic aromatic hydrocarbons by the Chilean white-rot fungus Anthracophyllum discolor

(2010) Francisca Acevedo et al.   JOURNAL OF HAZARDOUS MATERIALS

Lignin Biosynthesis and Structure

(2010) R. Vanholme et al.   PLANT PHYSIOLOGY

LccA, an Archaeal Laccase Secreted as a Highly Stable Glycoprotein into the Extracellular Medium by Haloferax volcanii

(2009) S. Uthandi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aerobic Vanillate Degradation and C1 Compound Metabolism in Bradyrhizobium japonicum

(2009) N. Sudtachat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of genes in Streptomyces bacteria required for catabolism of lignin-derived aromatic compounds

(2009) Jennifer R. Davis et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

(2009) Larissa B. Folman et al.   FEMS MICROBIOLOGY ECOLOGY

An evidence of laccases in archaea

(2009) Krishna Kant Sharma et al.   INDIAN JOURNAL OF MICROBIOLOGY

What is microbial community ecology?

(2009) Allan Konopka   ISME Journal

Lignocellulose degradation and enzyme production by Irpex lacteus CD2 during solid-state fermentation of corn stover

(2009) Chunyan Xu et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this

(2009) Francisco J. Ruiz-Dueñas et al.   Microbial Biotechnology

Functional Analyses ofPseudomonas putidaBenzoate Transporters Expressed in the YeastSaccharomyces cerevisiae

(2008) Yoshitsugu NISHIKAWA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Role of fungal peroxidases in biological ligninolysis

(2008) K HAMMEL et al.   CURRENT OPINION IN PLANT BIOLOGY

FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

(2008) Anthony Levasseur et al.   FUNGAL GENETICS AND BIOLOGY

Aromatic degradative pathways in Acinetobacter baylyi underlie carbon catabolite repression

(2008) R. Fischer et al.   MICROBIOLOGY-SGM

Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation

(2008) E. M. Hearn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA