Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass
出版年份 2019 全文链接
标题
Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass
作者
关键词
-
出版物
mSystems
Volume 4, Issue 1, Pages -
出版商
American Society for Microbiology
发表日期
2019-02-18
DOI
10.1128/msystems.00163-18
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples
- (2018) Jeremiah J. Minich et al. mSystems
- Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
- (2018) Jacob T. Nearing et al. PeerJ
- Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
- (2018) Nicole M. Davis et al. Microbiome
- Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- (2017) Benjamin J Callahan et al. ISME Journal
- Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
- (2017) Amnon Amir et al. mSystems
- A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
- (2016) Rosalinda D’Amore et al. BMC GENOMICS
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Comprehensive description of blood microbiome from healthy donors assessed by 16S targeted metagenomic sequencing
- (2016) Sandrine Païssé et al. TRANSFUSION
- Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
- (2016) Angela Glassing et al. Gut Pathogens
- Does the Urinary Microbiome Play a Role in Urgency Urinary Incontinence and Its Severity?
- (2016) Lisa Karstens et al. Frontiers in Cellular and Infection Microbiology
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- The roles of the outdoors and occupants in contributing to a potential pan-microbiome of the built environment: a review
- (2016) Marcus H. Y. Leung et al. Microbiome
- Open-Source Sequence Clustering Methods Improve the State Of the Art
- (2016) Evguenia Kopylova et al. mSystems
- Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
- (2015) A Apprill et al. AQUATIC MICROBIAL ECOLOGY
- The effects of variable sample biomass on comparative metagenomics
- (2015) Meghan Chafee et al. ENVIRONMENTAL MICROBIOLOGY
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- Changes in 16s RNA Gene Microbial Community Profiling by Concentration of Prokaryotic DNA
- (2015) Angela Glassing et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Brain-gut-microbiota axis in Parkinson's disease
- (2015) Agata Mulak WORLD JOURNAL OF GASTROENTEROLOGY
- Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
- (2015) William Walters et al. mSystems
- The microbiome of the human lower airways: a next generation sequencing perspective
- (2015) Velma T. E. Aho et al. World Allergy Organization Journal
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- (2014) A Murat Eren et al. ISME Journal
- The Female Urinary Microbiome: a Comparison of Women with and without Urgency Urinary Incontinence
- (2014) M. M. Pearce et al. mBio
- Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients
- (2014) Vladimir Lazarevic et al. Frontiers in Cellular and Infection Microbiology
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- The role of the bacterial microbiome in lung disease
- (2013) Robert P Dickson et al. Expert Review of Respiratory Medicine
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Architectural design influences the diversity and structure of the built environment microbiome
- (2012) Steven W Kembel et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Evidence of Uncultivated Bacteria in the Adult Female Bladder
- (2012) A. J. Wolfe et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Interaction Between Obesity and the Gut Microbiota: Relevance in Nutrition
- (2011) Nathalie M. Delzenne et al. Annual Review of Nutrition
- Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis
- (2011) Patrick D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started