T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data
出版年份 2014 全文链接
标题
T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 43, Issue 4, Pages e22-e22
出版商
Oxford University Press (OUP)
发表日期
2014-12-16
DOI
10.1093/nar/gku1250
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Tangram: a comprehensive toolbox for mobile element insertion detection
- (2014) Jiantao Wu et al. BMC GENOMICS
- The transposable elementBari-Jhehmediates oxidative stress response in Drosophila
- (2014) Lain Guio et al. MOLECULAR ECOLOGY
- TEMP: a computational method for analyzing transposable element polymorphism in populations
- (2014) Jiali Zhuang et al. NUCLEIC ACIDS RESEARCH
- A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila
- (2014) Lidia Mateo et al. PLoS Genetics
- How do mammalian transposons induce genetic variation? A conceptual framework
- (2013) Keiko Akagi et al. BIOESSAYS
- The Next-Generation Sequencing Revolution and Its Impact on Genomics
- (2013) Daniel C. Koboldt et al. CELL
- The impact of transposable elements in environmental adaptation
- (2013) Elena Casacuberta et al. MOLECULAR ECOLOGY
- Single-cell sequencing-based technologies will revolutionize whole-organism science
- (2013) Ehud Shapiro et al. NATURE REVIEWS GENETICS
- The Use of RelocaTE and Unassembled Short Reads to Produce High-Resolution Snapshots of Transposable Element Generated Diversity in Rice
- (2013) Sofia M. C. Robb et al. G3-Genes Genomes Genetics
- Transposable Elements Re-Wire and Fine-Tune the Transcriptome
- (2013) Michael Cowley et al. PLoS Genetics
- RetroSeq: transposable element discovery from next-generation sequencing data
- (2012) Thomas M. Keane et al. BIOINFORMATICS
- The impact of transposable elements on eukaryotic genomes: From genome size increase to genetic adaptation to stressful environments
- (2012) Benoît Chénais et al. GENE
- The Drosophila melanogaster Genetic Reference Panel
- (2012) Trudy F. C. Mackay et al. NATURE
- Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster
- (2012) Raquel S. Linheiro et al. PLoS One
- Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster
- (2012) Yuan Zhu et al. PLoS One
- Landscape of Somatic Retrotransposition in Human Cancers
- (2012) E. Lee et al. SCIENCE
- Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
- (2012) Robert Kofler et al. PLoS Genetics
- SHRiMP2: Sensitive yet Practical Short Read Mapping
- (2011) Matei David et al. BIOINFORMATICS
- The struggle for life of the genome's selfish architects
- (2011) Aurélie Hua-Van et al. Biology Direct
- Genome-wide analysis of mobile genetic element insertion sites
- (2011) Kamal Rawal et al. NUCLEIC ACIDS RESEARCH
- Successive Increases in the Resistance of Drosophila to Viral Infection through a Transposon Insertion Followed by a Duplication
- (2011) Michael M. Magwire et al. PLoS Genetics
- A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
- (2011) Chip Stewart et al. PLoS Genetics
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
- (2010) Fereydoun Hormozdiari et al. BIOINFORMATICS
- Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons
- (2010) Rebecca C. Iskow et al. CELL
- A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution
- (2010) C. Biemont GENETICS
- Validation of Rearrangement Break Points Identified by Paired-End Sequencing in Natural Populations of Drosophila melanogaster
- (2010) Julie M. Cridland et al. Genome Biology and Evolution
- Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
- (2010) A. D. Ewing et al. GENOME RESEARCH
- Population Genomics of Transposable Elements in Drosophila melanogaster
- (2010) D. A. Petrov et al. MOLECULAR BIOLOGY AND EVOLUTION
- T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data
- (2010) Anna-Sophie Fiston-Lavier et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila
- (2010) Josefa González et al. PLoS Genetics
- Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs
- (2009) E Lerat HEREDITY
- Characterizing natural variation using next-generation sequencing technologies
- (2009) Yoav Gilad et al. TRENDS IN GENETICS
- SHRiMP: Accurate Mapping of Short Color-space Reads
- (2009) Stephen M. Rumble et al. PLoS Computational Biology
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- A universal classification of eukaryotic transposable elements implemented in Repbase
- (2008) Vladimir V. Kapitonov et al. NATURE REVIEWS GENETICS
- High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster
- (2008) Josefa González et al. PLOS BIOLOGY
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