MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
出版年份 2019 全文链接
标题
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-03-08
DOI
10.1093/nar/gkz173
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Complete mitochondrial genome of Parasesarma affine (Brachyura: Sesarmidae): Gene rearrangements in Sesarmidae and phylogenetic analysis of the Brachyura
- (2018) Zhengfei Wang et al. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
- Mitogenome sequence accuracy using different elucidation methods
- (2017) Renata Velozo Timbó et al. PLoS One
- Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
- (2017) Satoshi Yamamoto et al. Scientific Reports
- Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
- (2016) Jennifer L.A. Shaw et al. BIOLOGICAL CONSERVATION
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- The genomic basis of parasitism in the Strongyloides clade of nematodes
- (2016) Vicky L Hunt et al. NATURE GENETICS
- Redundans: an assembly pipeline for highly heterozygous genomes
- (2016) Leszek P. Pryszcz et al. NUCLEIC ACIDS RESEARCH
- A cost-efficient and simple protocol to enrich prey DNA from extractions of predatory arthropods for large-scale gut content analysis by Illumina sequencing
- (2016) Henrik Krehenwinkel et al. Methods in Ecology and Evolution
- Critical considerations for the application of environmental DNA methods to detect aquatic species
- (2016) Caren S. Goldberg et al. Methods in Ecology and Evolution
- Mitochondrial metagenomics: letting the genes out of the bottle
- (2016) Alex Crampton-Platt et al. GigaScience
- Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis
- (2015) Shanlin Liu et al. Molecular Ecology Resources
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
- (2015) Tyler R. Kartzinel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary analysis of the female-specific avian W chromosome
- (2015) Linnéa Smeds et al. Nature Communications
- Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages
- (2015) Carola Gómez-Rodríguez et al. Methods in Ecology and Evolution
- High-throughput monitoring of wild bee diversity and abundance via mitogenomics
- (2015) Min Tang et al. Methods in Ecology and Evolution
- DNA Barcoding and Elucidation of Cryptic Diversity in Thrips (Thysanoptera)
- (2015) K. B. Rebijith et al. FLORIDA ENTOMOLOGIST
- SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
- (2014) Y. Xie et al. BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- Is It an Ant or a Butterfly? Convergent Evolution in the Mitochondrial Gene Order of Hymenoptera and Lepidoptera
- (2014) Massimiliano Babbucci et al. Genome Biology and Evolution
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- (2014) Rei Kajitani et al. GENOME RESEARCH
- REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology
- (2014) Helen C. Rees et al. JOURNAL OF APPLIED ECOLOGY
- Sequencing depth and coverage: key considerations in genomic analyses
- (2014) David Sims et al. NATURE REVIEWS GENETICS
- Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics
- (2014) Min Tang et al. NUCLEIC ACIDS RESEARCH
- Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny
- (2013) Stephen L. Cameron Annual Review of Entomology
- nhmmer: DNA homology search with profile HMMs
- (2013) T. J. Wheeler et al. BIOINFORMATICS
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline
- (2013) W. Iwasaki et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
- (2013) Iñaki Comas et al. NATURE GENETICS
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification
- (2013) Xin Zhou et al. GigaScience
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- MITOS: Improved de novo metazoan mitochondrial genome annotation
- (2012) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Who is eating what: diet assessment using next generation sequencing
- (2011) FRANCOIS POMPANON et al. MOLECULAR ECOLOGY
- Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
- (2011) Frank Jühling et al. NUCLEIC ACIDS RESEARCH
- Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing
- (2011) Kristine Bohmann et al. PLoS One
- Mitochondrial genomics in Orthoptera using MOSAS
- (2010) Nathan C. Sheffield et al. Mitochondrial DNA
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Infernal 1.0: inference of RNA alignments
- (2009) E. P. Nawrocki et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
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