A cost-efficient and simple protocol to enrich prey DNA from extractions of predatory arthropods for large-scale gut content analysis by Illumina sequencing

Sparing spiders: faeces as a non-invasive source of DNA

(2015) Daniela Sint et al.   Frontiers in Zoology

Detection and decay rates of prey and prey symbionts in the gut of a predator through metagenomics

(2015) Débora P. Paula et al.   Molecular Ecology Resources

Inferring biotic interactions from proxies

(2015) Ignacio Morales-Castilla et al.   TRENDS IN ECOLOGY & EVOLUTION

DNA barcodes for ecology, evolution, and conservation

(2015) W. John Kress et al.   TRENDS IN ECOLOGY & EVOLUTION

Occurrence of Ixodiphagus hookeri (Hymenoptera: Encyrtidae) in Ixodes ricinus (Acari: Ixodidae) in Southern Italy

(2015) Rafael Antonio Nascimento Ramos et al.   Ticks and Tick-Borne Diseases

Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages

(2015) Carola Gómez-Rodríguez et al.   Methods in Ecology and Evolution

Discovery of a monophagous true predator, a specialist termite-eating spider (Araneae: Ammoxenidae)

(2015) Lenka Petráková et al.   Scientific Reports

Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey

(2015) Charles C. Y. Xu et al.   PLoS One

Comparative Evaluation of DNA Extraction Methods from Feces of Multiple Host Species for Downstream Next-Generation Sequencing

(2015) Marcia L. Hart et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing

(2014) Vinzenz Lange et al.   BMC GENOMICS

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

(2014) J. Gibson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

The detectability half-life in arthropod predator-prey research: what it is, why we need it, how to measure it, and how to use it

(2013) Matthew H. Greenstone et al.   MOLECULAR ECOLOGY

A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes

(2013) J. Piñol et al.   Molecular Ecology Resources

The effect of predator identity on post-feeding prey DNA detection success in soil-dwelling macro-invertebrates

(2013) Thomas Waldner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

EVOLUTION OF STENOPHAGY IN SPIDERS (ARANEAE): EVIDENCE BASED ON THE COMPARATIVE ANALYSIS OF SPIDER DIETS

(2011) Stano Pekár et al.   EVOLUTION

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Molecular detection of trophic links in a complex insect host-parasitoid food web

(2011) JAN HRCEK et al.   Molecular Ecology Resources

Optimizing methods for PCR-based analysis of predation

(2011) DANIELA SINT et al.   Molecular Ecology Resources

DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches

(2011) Dáithí C. Murray et al.   PLoS One

Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host

(2010) RODOLPHE ROUGERIE et al.   MOLECULAR ECOLOGY

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces

(2010) MATT R. K. ZEALE et al.   Molecular Ecology Resources

Detection of Predation Using qPCR: Effect of Prey Quantity, Elapsed Time, Chaser Diet, and Sample Preservation on Detectable Quantity of Prey DNA

(2009) Donald C. Weber et al.   JOURNAL OF INSECT SCIENCE

Species on the menu of a generalist predator, the eastern red bat (Lasiurus borealis): using a molecular approach to detect arthropod prey

(2009) ELIZABETH L. CLARE et al.   MOLECULAR ECOLOGY

The diversity of reproductive parasites among arthropods: Wolbachia do not walk alone

(2008) Olivier Duron et al.   BMC BIOLOGY

A universal DNA mini-barcode for biodiversity analysis

(2008) Isabelle Meusnier et al.   BMC GENOMICS

The effects of temperature on detection of prey DNA in two species of carabid beetle

(2008) K. von Berg et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs

(2008) Hege Vestheim et al.   Frontiers in Zoology