Sequence Determinants for Nuclear Retention and Cytoplasmic Export of mRNAs and lncRNAs
出版年份 2018 全文链接
标题
Sequence Determinants for Nuclear Retention and Cytoplasmic Export of mRNAs and lncRNAs
作者
关键词
-
出版物
Frontiers in Genetics
Volume 9, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2018-10-17
DOI
10.3389/fgene.2018.00440
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Stress Granule Assembly Disrupts Nucleocytoplasmic Transport
- (2018) Ke Zhang et al. CELL
- High‐throughput identification of RNA nuclear enrichment sequences
- (2018) Chinmay J Shukla et al. EMBO JOURNAL
- A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs
- (2018) Chuan Huang et al. GENES & DEVELOPMENT
- Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay
- (2018) Bronwyn A. Lucas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Universal Alternative Splicing of Noncoding Exons
- (2018) Ira W. Deveson et al. Cell Systems
- Biological functions, regulatory mechanisms, and disease relevance of RNA localization pathways
- (2018) Samantha Bovaird et al. FEBS LETTERS
- Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells
- (2018) Yoav Lubelsky et al. NATURE
- An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression
- (2017) Koichi Ogami et al. GENES & DEVELOPMENT
- CG dinucleotide suppression enables antiviral defence targeting non-self RNA
- (2017) Matthew A. Takata et al. NATURE
- ALYREF mainly binds to the 5′ and the 3′ regions of the mRNA in vivo
- (2017) Min Shi et al. NUCLEIC ACIDS RESEARCH
- CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells
- (2017) Louis Philip Benoit Bouvrette et al. RNA
- Alternative Splicing May Not Be the Key to Proteome Complexity
- (2017) Michael L. Tress et al. TRENDS IN BIOCHEMICAL SCIENCES
- The New RNA World: Growing Evidence for Long Noncoding RNA Functionality
- (2017) Allison Jandura et al. TRENDS IN GENETICS
- Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking
- (2017) Pornchai Kaewsapsak et al. eLife
- YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs
- (2017) Ian A Roundtree et al. eLife
- The role of TREX in gene expression and disease
- (2016) C. G. Heath et al. BIOCHEMICAL JOURNAL
- Single particle imaging of mRNAs crossing the nuclear pore: Surfing on the edge
- (2016) Alexander F. Palazzo et al. BIOESSAYS
- Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
- (2016) Ronit Wilk et al. GENES & DEVELOPMENT
- SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export
- (2016) Michaela Müller-McNicoll et al. GENES & DEVELOPMENT
- HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNARMRP
- (2016) Ji Heon Noh et al. GENES & DEVELOPMENT
- Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs
- (2016) Marta Melé et al. GENOME RESEARCH
- Multiparameter functional diversity of human C2H2 zinc finger proteins
- (2016) Frank W. Schmitges et al. GENOME RESEARCH
- An NXF1 mRNA with a retained intron is expressed in hippocampal and neocortical neurons and is translated into a protein that functions as an Nxf1 cofactor
- (2016) Ying Li et al. MOLECULAR BIOLOGY OF THE CELL
- Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts
- (2016) Nicola Meola et al. MOLECULAR CELL
- The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
- (2016) Dan Dominissini et al. NATURE
- Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome
- (2016) Xiaoyu Li et al. Nature Chemical Biology
- Integrative classification of human coding and noncoding genes through RNA metabolism profiles
- (2016) Neelanjan Mukherjee et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Targeted Intron Retention and Excision for Rapid Gene Regulation in Response to Neuronal Activity
- (2016) Oriane Mauger et al. NEURON
- A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, andN1-methyladenosine modification
- (2016) Can Cenik et al. RNA
- Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut
- (2016) N. J. Proudfoot SCIENCE
- Modulation of mRNA and lncRNA expression dynamics by the Set2–Rpd3S pathway
- (2016) Ji Hyun Kim et al. Nature Communications
- Integrative classification of human coding and noncoding genes through RNA metabolism profiles
- (2016) Neelanjan Mukherjee et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Detained introns are a novel, widespread class of post-transcriptionally spliced introns
- (2015) Paul L. Boutz et al. GENES & DEVELOPMENT
- Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
- (2015) Xiaoyu Li et al. Nature Chemical Biology
- Splicing promotes the nuclear export ofβ-globinmRNA by overcoming nuclear retention elements
- (2015) Abdalla Akef et al. RNA
- Evolutionary conservation of a molecular machinery for export and expression of mRNAs with retained introns
- (2015) Baomin Wang et al. RNA
- mRNA export through an additional cap-binding complex consisting of NCBP1 and NCBP3
- (2015) Anna Gebhardt et al. Nature Communications
- Nuclear Retention of mRNA in Mammalian Tissues
- (2015) Keren Bahar Halpern et al. Cell Reports
- Non-coding RNA: what is functional and what is junk?
- (2015) Alexander F. Palazzo et al. Frontiers in Genetics
- The Consensus 5' Splice Site Motif Inhibits mRNA Nuclear Export
- (2015) Eliza S. Lee et al. PLoS One
- Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
- (2014) Schraga Schwartz et al. CELL
- A Novel RNA Motif Mediates the Strict Nuclear Localization of a Long Noncoding RNA
- (2014) B. Zhang et al. MOLECULAR AND CELLULAR BIOLOGY
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
- (2014) Ezgi Hacisuleyman et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Sub-Element in PRE enhances nuclear export of intronless mRNAs by recruiting the TREX complex via ZC3H18
- (2014) B. Chi et al. NUCLEIC ACIDS RESEARCH
- Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP
- (2014) Vihandha O. Wickramasinghe et al. NUCLEIC ACIDS RESEARCH
- THOC5 controls 3′end-processing of immediate early genes via interaction with polyadenylation specific factor 100 (CPSF100)
- (2014) Doan Duy Hai Tran et al. NUCLEIC ACIDS RESEARCH
- Inhibition of U4 snRNA in Human Cells Causes the Stable Retention of Polyadenylated Pre-mRNA in the Nucleus
- (2014) Anne Hett et al. PLoS One
- The Case for Junk DNA
- (2014) Alexander F. Palazzo et al. PLoS Genetics
- Sumoylation is Required for the Cytoplasmic Accumulation of a Subset of mRNAs
- (2014) Hui Zhang et al. Genes
- U1 snRNP Control of 3´-End Processing and the Therapeutic Application of U1 Inhibition Combined with RNA Interference
- (2013) L. Blazquez et al. CURRENT MOLECULAR MEDICINE
- Polypyrimidine tract binding protein (PTB) associates with intronic and exonic domains to squelch nuclear export of unspliced RNA
- (2013) Dipika Roy et al. FEBS LETTERS
- STAU1 binding 3' UTR IRAlus complements nuclear retention to protect cells from PKR-mediated translational shutdown
- (2013) R. A. Elbarbary et al. GENES & DEVELOPMENT
- The human TREX-2 complex is stably associated with the nuclear pore basket
- (2013) D. Umlauf et al. JOURNAL OF CELL SCIENCE
- Promoter directionality is controlled by U1 snRNP and polyadenylation signals
- (2013) Albert E. Almada et al. NATURE
- Bimodal expression of PHO84 is modulated by early termination of antisense transcription
- (2013) Manuele Castelnuovo et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I
- (2013) J. Katahira et al. NUCLEIC ACIDS RESEARCH
- Identification of Novel Stress Granule Components That Are Involved in Nuclear Transport
- (2013) Hicham Mahboubi et al. PLoS One
- Staufen-mediated mRNA decay
- (2013) Eonyoung Park et al. Wiley Interdisciplinary Reviews-RNA
- Trafficking of mRNAs containing ALREX-promoting elements through nuclear speckles
- (2013) Abdalla Akef et al. Nucleus
- Nuclear export as a key arbiter of “mRNA identity” in eukaryotes
- (2012) Alexander F. Palazzo et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Constructive neutral evolution: exploring evolutionary theory’s curious disconnect
- (2012) Arlin Stoltzfus Biology Direct
- Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast
- (2012) Folkert J. van Werven et al. CELL
- The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus
- (2012) Guramrit Singh et al. CELL
- U1 snRNP Determines mRNA Length and Regulates Isoform Expression
- (2012) Michael G. Berg et al. CELL
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- A complex immunodeficiency is based on U1 snRNP-mediated poly(A) site suppression
- (2012) Jörg Langemeier et al. EMBO JOURNAL
- A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails
- (2012) J. E. Wilusz et al. GENES & DEVELOPMENT
- Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
- (2012) K. Yap et al. GENES & DEVELOPMENT
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- (2012) H. Tilgner et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
- (2012) Guanqun Zheng et al. MOLECULAR CELL
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- Aly and THO are required for assembly of the human TREX complex and association of TREX components with the spliced mRNA
- (2012) Binkai Chi et al. NUCLEIC ACIDS RESEARCH
- Evidence that a consensus element found in naturally intronless mRNAs promotes mRNA export
- (2012) Haixin Lei et al. NUCLEIC ACIDS RESEARCH
- Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
- (2012) Jeffrey E. Squires et al. NUCLEIC ACIDS RESEARCH
- Localization of Nucleoporin Tpr to the Nuclear Pore Complex Is Essential for Tpr Mediated Regulation of the Export of Unspliced RNA
- (2012) Kalpana Rajanala et al. PLoS One
- Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles
- (2012) R. Miyagawa et al. RNA
- hnRNP C Tetramer Measures RNA Length to Classify RNA Polymerase II Transcripts for Export
- (2012) A. McCloskey et al. SCIENCE
- Two-timing zinc finger transcription factors liaising with RNA
- (2012) Jon Burdach et al. TRENDS IN BIOCHEMICAL SCIENCES
- Transposable elements reveal a stem cell-specific class of long noncoding RNAs
- (2012) David Kelley et al. GENOME BIOLOGY
- mRNA export and the TREX complex
- (2011) Jun Katahira Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Single-Molecule Imaging of Transcriptionally Coupled and Uncoupled Splicing
- (2011) Diana Y. Vargas et al. CELL
- What do expression dynamics tell us about the mechanism of transcription?
- (2011) Daniel R Larson CURRENT OPINION IN GENETICS & DEVELOPMENT
- Multiple factors in the early splicing complex are involved in the nuclear retention of pre-mRNAs in mammalian cells
- (2011) Reiko Takemura et al. GENES TO CELLS
- How a neutral evolutionary ratchet can build cellular complexity
- (2011) Julius Lukeš et al. IUBMB LIFE
- lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements
- (2011) Chenguang Gong et al. NATURE
- Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex
- (2011) H. Lei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Tpr protein regulates export of mRNAs with retained introns that traffic through the Nxf1 pathway
- (2011) J. H. Coyle et al. RNA
- Dynamic control of endogenous retroviruses during development
- (2011) Helen M. Rowe et al. VIROLOGY
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Gene regulation by SINES and inosines: biological consequences of A-to-I editing of Alu element inverted repeats
- (2010) Ling-Ling Chen et al. CELL CYCLE
- ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex
- (2010) K. Dufu et al. GENES & DEVELOPMENT
- Origins, evolution, and phenotypic impact of new genes
- (2010) H. Kaessmann GENOME RESEARCH
- U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
- (2010) Daisuke Kaida et al. NATURE
- Irremediable Complexity?
- (2010) M. W. Gray et al. SCIENCE
- A role for TREX components in the release of spliced mRNA from nuclear speckle domains
- (2010) Anusha P. Dias et al. Nature Communications
- Pre-mRNA 3′-end processing complex assembly and function
- (2010) Serena Chan et al. Wiley Interdisciplinary Reviews-RNA
- Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation
- (2009) Melissa J. Moore et al. CELL
- UIF, a New mRNA Export Adaptor that Works Together with REF/ALY, Requires FACT for Recruitment to mRNA
- (2009) Guillaume M. Hautbergue et al. CURRENT BIOLOGY
- mRNA Export from Mammalian Cell Nuclei Is Dependent on GANP
- (2009) Vihandha O. Wickramasinghe et al. CURRENT BIOLOGY
- Molecular dissection of the eukaryotic initiation factor 4E (eIF4E) export-competent RNP
- (2009) Ivan Topisirovic et al. EMBO JOURNAL
- Mammalian pre-mRNA 3′ End Processing Factor CF Im68 Functions in mRNA Export
- (2009) Marc-David Ruepp et al. MOLECULAR BIOLOGY OF THE CELL
- Altered Nuclear Retention of mRNAs Containing Inverted Repeats in Human Embryonic Stem Cells: Functional Role of a Nuclear Noncoding RNA
- (2009) Ling-Ling Chen et al. MOLECULAR CELL
- Gene silencing by synthetic U1 Adaptors
- (2009) Rafal Goraczniak et al. NATURE BIOTECHNOLOGY
- Adaptive Evolution in Zinc Finger Transcription Factors
- (2009) Ryan O. Emerson et al. PLoS Genetics
- Alu element-mediated gene silencing
- (2008) Ling-Ling Chen et al. EMBO JOURNAL
- Cotranscriptional Recruitment of the mRNA Export Factor Yra1 by Direct Interaction with the 3′ End Processing Factor Pcf11
- (2008) Sara Ann Johnson et al. MOLECULAR CELL
- Requirements for gene silencing mediated by U1 snRNA binding to a target sequence
- (2008) Xabi Abad et al. NUCLEIC ACIDS RESEARCH
- Splicing promotes rapid and efficient mRNA export in mammalian cells
- (2008) P. Valencia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now