PromoterPredict: sequence-based modelling of Escherichia coli σ70 promoter strength yields logarithmic dependence between promoter strength and sequence

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

(2015) Socorro Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Relationship between promoter sequence and its strength in gene expression

(2014) Jingwei Li et al.   EUROPEAN PHYSICAL JOURNAL E

Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

(2014) Ritwika S. Basu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PePPER: a webserver for prediction of prokaryote promoter elements and regulons

(2012) Anne de Jong et al.   BMC GENOMICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

Perspectives on the RNA polymerase II core promoter

(2011) James T. Kadonaga   Wiley Interdisciplinary Reviews-Developmental Biology

Design, construction and characterization of a set of insulated bacterial promoters

(2010) J. H. Davis et al.   NUCLEIC ACIDS RESEARCH

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor,  E

(2010) V. A. Rhodius et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Measuring the activity of BioBrick promoters using an in vivo reference standard

(2009) Jason R Kelly et al.   Journal of Biological Engineering

Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes

(2008) Michael Dekhtyar et al.   BMC BIOINFORMATICS